PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027082-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 342aa    MW: 39683.7 Da    PI: 9.7253
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027082-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.22.1e-11136193254
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 
                       ++R+++tkeq ++L   Fe+   +ps++e++  +++l    +++e++V++W + r+++
  PSME_00027082-RA 136 KPRWKPTKEQKRILIPKFESvMVKPSRHEIKTVTAQLqefgQVEEANVFNWLCKRKYR 193
                       89*****************99**********************************998 PP
2Wus_type_Homeobox60.53.7e-20135193260
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 
                        +++RW Pt+eQ +iL   ++s ++ P+++ei+ +ta+L+e+G++e++NVf+W   rk R
   PSME_00027082-RA 135 TKPRWKPTKEQKRILIPKFESVMVKPSRHEIKTVTAQLQEFGQVEEANVFNWLCKRKYR 193
                        689**************************************************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.73E-5132199IPR009057Homeodomain-like
PfamPF000465.1E-9136193IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MARWMCGWMC GQWALRQKSA LVSKSTGMRT TAVGRRVRAR DDTVSDERRS KGWALRSKQC  60
AWLKRTSVSR ASAQGYRRQP FLAQCTVGLR QRLSSDSGTF SRFCGAAAAY SEGLQQSFRQ  120
PSTSSANEER SWHKTKPRWK PTKEQKRILI PKFESVMVKP SRHEIKTVTA QLQEFGQVEE  180
ANVFNWLCKR KYRIFNRVER TQKNTKTIIN VANNTADSLY NTGETYSSYV LEDPFFTQDD  240
PFFTHQDRFF HIGEWYSSYD PFFTHHDNPF FIHQEDFHMQ MNEEMSNAQC SSMQAVATAA  300
GVFNEGTFAD TTGTIFSYLI SSVRYLVYYI YSAEYLVCRV FL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-15homeobox-3