PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027103-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 189aa    MW: 20885.3 Da    PI: 5.0593
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027103-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.8e-152372255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g+Wv+eI  p+    +  r +lg+++t+e+Aa+a++ a  +l+g
  PSME_00027103-RA 23 QFKGIRMRK-WGKWVSEIPMPN----StGRLWLGSYDTPEKAARAYDFAVYCLRG 72
                      69*****99.*******99983....249********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-272281IPR001471AP2/ERF domain
CDDcd000187.43E-252380No hitNo description
PROSITE profilePS5103220.7192380IPR001471AP2/ERF domain
SMARTSM003802.3E-282386IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-192380IPR016177DNA-binding domain
PRINTSPR003672.2E-82435IPR001471AP2/ERF domain
PfamPF008471.8E-92472IPR001471AP2/ERF domain
PRINTSPR003672.2E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAKTSQNQNG RSKPENRSLK SRQFKGIRMR KWGKWVSEIP MPNSTGRLWL GSYDTPEKAA  60
RAYDFAVYCL RGSKAKLNFP SIPPEIPCAS SLSPPQIQAS AAKFAAEEFR VTSEDYASFP  120
ASSSGSEAFS FPGSGSEAEC RNDGQEIWAE QGPAFWDSVL FECLESGKSL NLDDFPPLDD  180
SMNYFGVLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-142080263ATERF1
3gcc_A2e-142080263ATERF1
5wx9_A2e-1423811473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843906.18e-37ethylene-responsive transcription factor ERF017
SwissprotQ9S7L53e-34ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA9NQM14e-81A9NQM1_PICSI; Uncharacterized protein
STRINGERN055813e-36(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]