PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027147-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 133aa    MW: 14814 Da    PI: 8.3929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027147-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.5e-0797124229
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCC CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPk 29 
                       +r h+++E +RR+++N  ++ Lr+ lP 
  PSME_00027147-RA  97 KRRHKMVEMQRRKDMNALLSILRSRLPG 124
                       566**********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.05E-595124No hitNo description
Gene3DG3DSA:4.10.280.105.0E-495125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MSIPSWLGSE FLACDDLVQK LDVEGIWSSN PFLSTERIEV PPVYNTHHAS ICNSVNGCNC  60
GTLADHPSLS NPVLMATFCN SSRPNAGLSQ GAVPRNKRRH KMVEMQRRKD MNALLSILRS  120
RLPGENFRVC FLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-