PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027152-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 208aa    MW: 23903.3 Da    PI: 5.1786
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027152-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.25.9e-182110028109
               NAM  28 leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy 109
                        +l+++i+++d+y+++Pw+Lp  ++ +e++w+fF++r +++    r+nr+t sgyWkatg+d++v ++       k  Lv+ 
  PSME_00027152-RA  21 QSLHRIIPTLDLYRYDPWELPDLANVGERQWFFFVPRYHTK--FARPNRMTVSGYWKATGSDRAVRNELLLSASKKMELVLC 100
                       456678***************8788899********98765..57********************99654455555566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.8581134IPR003441NAC domain
SuperFamilySSF1019411.16E-1821105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MKVSDSIPRK RSCWASISRK QSLHRIIPTL DLYRYDPWEL PDLANVGERQ WFFFVPRYHT  60
KFARPNRMTV SGYWKATGSD RAVRNELLLS ASKKMELVLC RIYRKAVTQK SMEQLVKHDD  120
LEREKPVVTE MSIEQGFADE DDKEEPVISG DEGKSDSILD TVICRSNPLT DANVFPLHLG  180
IGQTEDEASI FDDLIPIICC EEIIQIPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-15258647110NO APICAL MERISTEM PROTEIN
1ut4_B1e-15258647110NO APICAL MERISTEM PROTEIN
1ut7_A1e-15258647110NO APICAL MERISTEM PROTEIN
1ut7_B1e-15258647110NO APICAL MERISTEM PROTEIN
4dul_A1e-15258647110NAC domain-containing protein 19
4dul_B1e-15258647110NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A075M5N51e-30A0A075M5N5_9SPER; NAC domain protein
STRINGPavir.Db00028.1.p4e-25(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.16e-23NAC domain containing protein 36