PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027164-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 329aa    MW: 36616.7 Da    PI: 9.3258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027164-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-10191230650
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveY 50 
                        ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  Av+Y
  PSME_00027164-RA 191 LMAERRRRKKLNDRLLMLRSVVPKiS------KMDRASILGDAVQY 230
                       589*********************66......************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.38E-10182230No hitNo description
SuperFamilySSF474593.4E-12184235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.221185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-8191230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-11192237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGLEMDWTAL LDNIFSSFRA MLDGGEGEDD FYNIMDSNGR MVEDLLGSYL MRPHSYVFGN  60
VGSIKISHHL SCSMTPSDYM LADGIESTFK KNGVNKKEDD GVGGREANYV VVADNTDNRN  120
VNAGNVCRVK KNGRGGIEST FKKNGVNQKP DGVVCAREAD CAVASDNTDN RNVDAANVCR  180
VKKNRLPANN LMAERRRRKK LNDRLLMLRS VVPKISKMDR ASILGDAVQY PQEVLQRGGE  240
EKRRKGPTHS HVLFRKARLT SIHNQGTIKA LDGLGLDVQQ AVISCLNGFA LDVLQEKVEN  300
RNILSIRFQI GIHGILVVVY KKKQEDYNI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193200ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1226873e-40BT122687.1 Picea sitchensis clone WS0454_C09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010096038.11e-29(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-19bHLH family protein