PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027334-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 312aa    MW: 35401.8 Da    PI: 6.9851
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027334-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.2e-18162216256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  PSME_00027334-RA 162 RKKLRLSKEQSALLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 216
                       778899***********************************************98 PP
2HD-ZIP_I/II1283.9e-41162250190
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                       +kk+rlskeq++lLEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +
  PSME_00027334-RA 162 RKKLRLSKEQSALLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENRRLQKEVQELR-A 250
                       69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046187.7E-590117IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.5E-17138219IPR009057Homeodomain-like
SuperFamilySSF466894.05E-18152219IPR009057Homeodomain-like
PROSITE profilePS5007117.394158218IPR001356Homeobox domain
SMARTSM003891.3E-15160222IPR001356Homeobox domain
CDDcd000861.61E-15162219No hitNo description
PfamPF000463.2E-15162216IPR001356Homeobox domain
PROSITE patternPS000270193216IPR017970Homeobox, conserved site
SMARTSM003402.6E-26218261IPR003106Leucine zipper, homeobox-associated
PfamPF021831.0E-11218251IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MWAGPSPSFR NQARPSCDLF SAPMSGFQYF VKMRPRSDGD YGAGLRLGMG RMEEEDEQKR  60
NEPQLVQLQL DLLPLWPAHR DSSHGGGGLG IDMNQIPSPA DFDDDAVVSS PNSTVLSFQM  120
EPGNHAGNKR ERDDNSNNHE LELERASSRA CSDEEDGADT TRKKLRLSKE QSALLEESFK  180
EHNTLNPKQK LALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEFLKRC CESLTEENRR  240
LQKEVQELRA LRVSHPFYMQ LPLPLPAPTL TMCPSCERVA TADTHTTLSP WQPAFHPALR  300
SSYHMTPQCG TK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166TRKKLRL
2210218RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1040550.0BT104055.1 Picea glauca clone GQ02805_O24 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849539.13e-90homeobox-leucine zipper protein HOX11
SwissprotP466659e-77HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0C9QME41e-119A0A0C9QME4_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_22371_1708 transcribed RNA sequence
STRINGERN111201e-89(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.18e-60homeobox from Arabidopsis thaliana