PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027335-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 496aa    MW: 54301.7 Da    PI: 7.0222
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027335-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.56e-1084109227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++  C +++rtG+C yG +C+F+H+p
  PSME_00027335-RA  84 GEQDCAYYMRTGFCGYGMNCHFNHPP 109
                       6789********************97 PP
2zf-CCCH32.71.2e-10127150326
                       S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       +++C++f +tGtCkyG+ Ck++H+
  PSME_00027335-RA 127 QPECKHFIKTGTCKYGAVCKYHHP 150
                       799********************8 PP
3zf-CCCH31.14e-10170195227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C++++ tG CkyG++CkF+H++
  PSME_00027335-RA 170 GEKECPYYMCTGSCKYGATCKFHHSE 195
                       6789********************95 PP
4zf-CCCH375.7e-12343368227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C+++++tG+CkyG +C+++H++
  PSME_00027335-RA 343 DQPQCQYYMKTGYCKYGTTCRYHHPK 368
                       6789********************96 PP
5zf-CCCH31.62.8e-10388413126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ++++ C+f+  +G+Ck+G+ CkF H+
  PSME_00027335-RA 388 PGQPTCPFYNMYGICKFGPVCKFDHP 413
                       57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.14182110IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-582109IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-784109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-686109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-588108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.051124152IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-4124151IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-7127150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6128152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4130150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971168196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6168196IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-4168195IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-8170195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4174195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.845341369IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4341368IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9343368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7343371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5347368IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817387415IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-6387414IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-7389413IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
RKTLFSSSTT TYGALEASDT DGGRRSSSNS EPMHENLHIR PRPLPSPRLP GDALEEAMLH  60
MTIESDDHLE GVGTYSGPYP ERPGEQDCAY YMRTGFCGYG MNCHFNHPPN IKQVAQYMSE  120
LPERVGQPEC KHFIKTGTCK YGAVCKYHHP SDRDGSRVQL NYLGLPMRQG EKECPYYMCT  180
GSCKYGATCK FHHSEPTALL PDSGSPVYAT AELSLSPASG SPYLAGLASW SLQKSPYVSG  240
PQLQGPSTYM PVIHSHQQST PSVQPGWSTY HAPISTLSSP DGKQQLGTST MYSSSHMTDS  300
SSNRHMRGVL SPPVQGSSTA MEHAGFQFQV AAPQRETFPE RPDQPQCQYY MKTGYCKYGT  360
TCRYHHPKER VELSPCCMLS SQGLPLRPGQ PTCPFYNMYG ICKFGPVCKF DHPLTDPSYN  420
PAAFSPSELL TTSYPKGCSS GALFQSTSEV FSEQVLKATD QYSKAEEASS FKQQSTEEGL  480
GDTLAAKSPS TSAAAI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6771210.0EF677121.1 Picea sitchensis clone WS02762_D09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252579.11e-130PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLB8LMU30.0B8LMU3_PICSI; Uncharacterized protein
STRINGXP_010252578.11e-130(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.15e-95zinc finger protein 1