PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027554-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 606aa    MW: 65463.9 Da    PI: 6.7574
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027554-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.9e-09414461455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  PSME_00027554-RA 414 SHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 461
                       8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.44E-11408465No hitNo description
SuperFamilySSF474598.64E-17408479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.669410460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16410478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-6414461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10416466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MGSDGKEQFG FSMNYKASGS PPSSNWQSAV ANVSMNNVQE SSLIVPTSSE SLSGSFFSLN  60
WEPLIEQSMP FQSSLSHMVS PSPPASSLPS DNIAIRELFG RLGGNLCSVS GPLGSTMDTV  120
LNMGTAWNPS NSSPNLNLAV DPSKGSLSIQ GAKHTPPHSL AQFSSDPGFA ERAAKFSCFG  180
NRNYPELATP FNFPEGEPLY RSAPADSSKI PRVQSNQSLK AGLPINLPNM AETKESNASE  240
TPHEGSDADP RFTDRKISRL SRSSTPVSTE DMKQIRATSG NESDEAELST GREESSSFGQ  300
IAGREPGSKT LNEINGRKRR VLSKAKAKDA PSVVASPGGI ETKSLEADEF PTKRYKGAEA  360
ASNEKDDAKS KAEQNSIMST GESSPTQTKD NVKALEPPKD YIHVRARRGQ ATDSHSLAER  420
VRREKISERM KFLQDLVPGC SKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPRLDF  480
NMDGLIAKDM LQSHGSSPRM LFATDPTAAF PQLHQPQQGP VQVGVTCGTE GHRMGHPVEG  540
ALRRTMNSQP HCMDGYGDSI PQGANGWDED LHSVVQMGFG QNRQSPFTSQ GFHGSVPTSH  600
MKIELN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6766660.0EF676666.1 Picea sitchensis clone WS02746_P06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848450.11e-163transcription factor bHLH78
TrEMBLB8LLM20.0B8LLM2_PICSI; Uncharacterized protein
STRINGERN100311e-162(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.26e-67bHLH family protein