PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00027983-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 142aa MW: 15840.2 Da PI: 7.8541

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00027983-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.1	7.2e-39	12	110	2	100
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 CaaCk++++kC+++C lapyfp+++p +f +h++FG +v+kllk+lp e+r da+sslvyeA+ara dPv+G+v+vi++l +++e+++ +l PSME_00027983-RA 12 CAACKFQKKKCSEKCLLAPYFPHNDPDRFLLIHRVFGYGHVVKLLKDLPAERRGDAVSSLVYEARARAADPVHGCVAVINNLLKKIEEVQLQL 104 ********************************************************************************************* PP DUF260 95 allkee 100 a+++e+ PSME_00027983-RA 105 ASTHEK 110 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.472	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-37	12	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MTSHVSKEQS TCAACKFQKK KCSEKCLLAP YFPHNDPDRF LLIHRVFGYG HVVKLLKDLP 60 AERRGDAVSS LVYEARARAA DPVHGCVAVI NNLLKKIEEV QLQLASTHEK LDINISVLHG 120 NLYTQFTGSC EGWDPDLYSA SP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-31	10	111	10	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-31	10	111	10	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307415.1	2e-37	PREDICTED: LOB domain-containing protein 1-like
Refseq	XP_007142160.1	1e-37	hypothetical protein PHAVU_008G257400g
TrEMBL	B8LQI9	2e-49	B8LQI9_PICSI; Uncharacterized protein
STRING	XP_007142160.1	5e-37	(Phaseolus vulgaris)
STRING	XP_004307415.1	7e-37	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	8e-38	LOB domain-containing protein 1