PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028054-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 192aa    MW: 21664.4 Da    PI: 5.9244
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028054-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601247.4e-39221221101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaC++lrr+C ++C lap fp ++p+kfa vh +FGasn++++l+++ +e+r+da+ss+v+eA++ +rdPvyG++gv+ +lqqq+  l+a+
  PSME_00028054-RA  22 PCAACRTLRRRCGEECLLAPFFPPDDPHKFATVHTVFGASNIIRMLQDVTNEHRDDAVSSMVFEARVTLRDPVYGCAGVVCRLQQQVLDLQAQ 114
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       la++++++
  PSME_00028054-RA 115 LATAQAQI 122
                       ***99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.31121122IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3822119IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
SHKYKFMLQM SEGNPRRRVA NPCAACRTLR RRCGEECLLA PFFPPDDPHK FATVHTVFGA  60
SNIIRMLQDV TNEHRDDAVS SMVFEARVTL RDPVYGCAGV VCRLQQQVLD LQAQLATAQA  120
QIFNLHCQQG NLVDFLTSSN SSFEKRGETA DYDYDEPLGS SWMDSPGSQV TDGEKDVNVL  180
LHEMFMCSRY YG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-352212911118LOB family transfactor Ramosa2.1
5ly0_B6e-352212911118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251265.13e-53LOB domain-containing protein 1
RefseqXP_015057811.13e-53LOB domain-containing protein 1
RefseqXP_021680496.14e-53LOB domain-containing protein 1-like
SwissprotQ9LQR01e-47LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2P6QHT32e-51A0A2P6QHT3_ROSCH; Putative transcription factor AS2-LOB family
TrEMBLA0A3Q7J1V15e-52A0A3Q7J1V1_SOLLC; Uncharacterized protein
TrEMBLQ6L4637e-52Q6L463_SOLDE; LOB domain protein 1, putative
STRINGSolyc11g072470.1.11e-52(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-39LOB domain-containing protein 1