PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028165-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 358aa    MW: 41636.9 Da    PI: 9.5279
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028165-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.3e-066182223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      +C+dCg sF+ + +L++H  +H
  PSME_00028165-RA 61 VCQDCGASFNKPAHLEQHKLSH 82
                      8*****************9998 PP
2zf-C2H2171.6e-0588112123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp   C  s++r+++L+rH+ +H
  PSME_00028165-RA  88 FVCPvdGCLCSYKRQDHLNRHLVKH 112
                       89********************998 PP
3zf-C2H218.17.5e-06117141123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp  dC+   s+ snLkrH ++H
  PSME_00028165-RA 117 FVCPkeDCNLQLSSMSNLKRHVKRH 141
                       89**********************9 PP
4zf-C2H212.30.00051161177115
                       EEET..TTTEEESSHHH CS
           zf-C2H2   1 ykCp..dCgksFsrksn 15 
                       y+Cp  +Cgk+F++  +
  PSME_00028165-RA 161 YPCPkpYCGKTFTTTTY 177
                       89***********9865 PP
5zf-C2H216.91.7e-05239263223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       +C+  +C  sFs ksnL++Hir  H
  PSME_00028165-RA 239 QCHfdNCLHSFSKKSNLNQHIRAvH 263
                       7*********************888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355312952IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-75979IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806082IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.846087IPR007087Zinc finger, C2H2
SMARTSM003550.236082IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.84E-973114No hitNo description
Gene3DG3DSA:3.30.160.601.1E-1180114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03788112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090112IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-5115141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.037117146IPR007087Zinc finger, C2H2
SMARTSM003550.0032117141IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280119141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-4179201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.11180205IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280182205IPR007087Zinc finger, C2H2
SMARTSM0035526208229IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.715238268IPR007087Zinc finger, C2H2
SMARTSM003550.056238263IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280240263IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-5243267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.12E-8248292No hitNo description
Gene3DG3DSA:3.30.160.606.5E-5268292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.9269295IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280271295IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVVSTRCCYF RMAAEDEKGS KRPKDLRRYC CKTCGITRSK RILLKLHIIS CHGSHRRSPC  60
VCQDCGASFN KPAHLEQHKL SHTGERTFVC PVDGCLCSYK RQDHLNRHLV KHEGKLFVCP  120
KEDCNLQLSS MSNLKRHVKR HEERGESWQS QNLKSREVKK YPCPKPYCGK TFTTTTYVEI  180
VCCEPGCYKY FTNEKALREH VQQNHSRVCC EVCGSRQLKK QIKRHMRIHE SQTCVERIQC  240
HFDNCLHSFS KKSNLNQHIR AVHLGLRPFK CRFAECEMSF AHKAVRDNHE KTGRHCYVQG  300
DFFEEDAAFQ SRPRGGRKRK IFTVNSLLKK RVACPDRSST VLDNGSSFLD WLTSSSRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf3_A3e-1356140287TRANSCRIPTION FACTOR IIIA
1tf6_A3e-135524210172PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D3e-135524210172PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311319RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1096510.0BT109651.1 Picea glauca clone GQ03211_B12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251838.11e-111PREDICTED: transcription factor IIIA
RefseqXP_010251839.11e-111PREDICTED: transcription factor IIIA
RefseqXP_010251840.11e-111PREDICTED: transcription factor IIIA
RefseqXP_010251841.11e-111PREDICTED: transcription factor IIIA
SwissprotQ84MZ47e-87TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2G5F7C61e-110A0A2G5F7C6_AQUCA; Uncharacterized protein
STRINGAquca_002_01327.11e-111(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.28e-80transcription factor IIIA