PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028194-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 270aa    MW: 30869.3 Da    PI: 5.0591
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028194-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.11.4e-2817111599
            DUF260   5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                       Ck+ +++C ++C++  ++++++ ++f ++h++FGa nv+kl+++lp ++r da++s+vyeA ar++dP  G++g+i++l++q++ l++++ ++
  PSME_00028194-RA  17 CKMEQKECLENCAILYHLASNDLHNFSILHQVFGACNVIKLIQDLPSNQRADAVNSMVYEASARLQDPAFGCTGIIQQLKSQISDLESQITTT 109
                       *****************************************************************************************9988 PP

            DUF260  98 ke 99 
                       ++
  PSME_00028194-RA 110 QS 111
                       76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.94712113IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-2716110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MMNNATEEPS AAFHDQCKME QKECLENCAI LYHLASNDLH NFSILHQVFG ACNVIKLIQD  60
LPSNQRADAV NSMVYEASAR LQDPAFGCTG IIQQLKSQIS DLESQITTTQ SMIQNIRYQQ  120
AELLASIPGF DTADEEDTTG KEQSRDVENE RDTENVKEGS YIKAGKGHVS SWKFYQCAYI  180
QVKSNYRNED QLRCMLKDIY FRYIQNDDGL DESVWTSAPV EFEVNGTNLA ESSKNNRNNL  240
KHASQIPEEA FKNQIPNRAK KNTWHRFYKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-221712815123LOB family transfactor Ramosa2.1
5ly0_B1e-221712815123LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-33LOB domain-containing protein 1