PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028195-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 190aa    MW: 20992.8 Da    PI: 6.5012
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028195-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.7e-39321311100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk++r+kC+k+Cvlapyfp+++p+kf+ v++l+G+ + +kll++lp e+r da+ss+vyeA  r rdPv G+vgvi++lq+++++l+a+
  PSME_00028195-RA  32 PCAACKIQRKKCTKKCVLAPYFPQDDPQKFRLVQRLYGNGHAIKLLQNLPAEKRGDAVSSMVYEASERNRDPVLGCVGVINDLQNKVAELEAQ 124
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  PSME_00028195-RA 125 LASTQAE 131
                       **99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.90531132IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-3832129IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
LALSEKTGSA HSNGKMSDVT ASIKPEGTSR TPCAACKIQR KKCTKKCVLA PYFPQDDPQK  60
FRLVQRLYGN GHAIKLLQNL PAEKRGDAVS SMVYEASERN RDPVLGCVGV INDLQNKVAE  120
LEAQLASTQA EVTNISQQHG DLLTIFTGSQ EPASDPNFYC ESPPDSVDTV MRQPVFHYVD  180
NLPLWELFWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-303113210111LOB family transfactor Ramosa2.1
5ly0_B1e-303113210111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597159.12e-45LOB domain-containing protein 1
SwissprotQ9LQR07e-41LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK081e-40LBD11_ARATH; LOB domain-containing protein 11
TrEMBLB8LQI92e-67B8LQI9_PICSI; Uncharacterized protein
STRINGAES674107e-45(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-43LOB domain-containing protein 1