PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00028196-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 147aa MW: 16509.6 Da PI: 4.3332

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00028196-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	45.4	2.3e-14	40	92	47	99
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 ++lp eer da+ss+vyeA r rdPv G+vgvi++lq+++++l+++l l k+ PSME_00028196-RA 40 TNLPAEERGDAVSSMVYEASERNRDPVLGCVGVIKDLQNKVAELESQLFLHKQ 92 57899****************************************99977765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.2E-12	41	89	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MSDNTVRCLQ NPKKVMYEEM CSGAIFPGGR SPEVPVGTKT NLPAEERGDA VSSMVYEASE 60 RNRDPVLGCV GVIKDLQNKV AELESQLFLH KQSQQYANLL TIFTGSQEPA SDPNFYCESP 120 PDSVDTFKRQ PVFDYVDTLP LWELFWP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003597159.1	1e-15	LOB domain-containing protein 1
TrEMBL	B8LQI9	2e-24	B8LQI9_PICSI; Uncharacterized protein
STRING	AES67410	4e-15	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-13	LBD family protein