PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028315-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 302aa    MW: 33458.8 Da    PI: 8.2117
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028315-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.4e-18169221456
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       + ++++eq   Lee F kn  p  +e++ LA +l+++ rqV vWFqNrRa+ k
  PSME_00028315-RA 169 KLRLSREQCALLEESFLKNTIPEYSEKQALALQLNISPRQVEVWFQNRRARTK 221
                       56789**********************************************98 PP
2HD-ZIP_I/II99.33.6e-32168255289
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                       kk+rls+eq +lLEesF +++  e ++K++la +L+++prqv+vWFqnrRARtk+kq+E dye Lkr+ + l+een++L+ke e+Lr+
  PSME_00028315-RA 168 KKLRLSREQCALLEESFLKNTIPEYSEKQALALQLNISPRQVEVWFQNRRARTKLKQTELDYELLKRCNELLAEENRKLHKELEKLRT 255
                       9****************999999***************************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.244163223IPR001356Homeobox domain
SMARTSM003895.8E-14165227IPR001356Homeobox domain
CDDcd000866.95E-15168224No hitNo description
Gene3DG3DSA:1.10.10.608.1E-17168221IPR009057Homeodomain-like
SuperFamilySSF466891.38E-17168231IPR009057Homeodomain-like
PfamPF000464.0E-15169221IPR001356Homeobox domain
PROSITE patternPS000270198221IPR017970Homeobox, conserved site
SMARTSM003407.3E-14223266IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDQDCSTPLS LGLSPGTGTS TRQKDHDHVS HRNANGPPVE LDLFPLAPVL PPEPRCGTLL  60
CEKTSPGQSI NGSGSCSERS VGKGIVTIHG LPVSRLSDAN KFHDSCYFNE DVGNINVSSS  120
NSTIESNENN QGNGYAMFKR KRGGTEGLEN ERGWSRALSD LKVEGCSKKL RLSREQCALL  180
EESFLKNTIP EYSEKQALAL QLNISPRQVE VWFQNRRART KLKQTELDYE LLKRCNELLA  240
EENRKLHKEL EKLRTMKLES PVRPPRTVTM CPSCEKVSPA NDSSHFTLAK VQSMFKCGAS  300
GP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215223RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotP466014e-41HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA9NKN42e-76A9NKN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.14e-41Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]