PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00028368-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NF-YA

Protein Properties

Length: 131aa MW: 14445.2 Da PI: 7.8797

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00028368-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	50.2	8.4e-16	99	130	2	34
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeks 34 p+YVNaKQy++Il+RRq+Rak+e+e+kl +ks PSME_00028368-RA 99 PPVYVNAKQYHGILRRRQSRAKAESENKL-IKS 130 59**************************9.666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	0.0023	96	131	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	21.461	97	131	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.5E-11	100	131	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	102	122	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
GTESSLSDEQ QKQPLQQQQV PPTGISPAHA EFVTRQTQLE LGHSGGDTLW QARTAFPYPD 60 PFYGNYVGAY GAQAMIPPHM LGVHQAGLPL PPSDAVEEPP VYVNAKQYHG ILRRRQSRAK 120 AESENKLIKS R

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF765388	0.0	KF765388.1 Larix kaempferi NFYA3 (NFYA3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024388758.1	9e-43	nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q84JP1	6e-21	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	D5AE55	6e-78	D5AE55_PICSI; Uncharacterized protein
STRING	PP1S31_299V6.1	4e-42	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	4e-24	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]