PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028375-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 314aa    MW: 35237 Da    PI: 5.9917
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028375-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.2e-18167221256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++keq   Lee F ++++++ +++  LAk l+L+ rqV vWFqNrRa+ k
  PSME_00028375-RA 167 RKKLRLSKEQSALLEESFLEHSTLNPKQKNALAKALNLQPRQVEVWFQNRRARTK 221
                       778899***********************************************98 PP
2HD-ZIP_I/II124.93.7e-40167257192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       +kk+rlskeq++lLEesF e+++L+p++K++la++L+lqprqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  PSME_00028375-RA 167 RKKLRLSKEQSALLEESFLEHSTLNPKQKNALAKALNLQPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELR-ALK 257
                       69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.73163223IPR001356Homeobox domain
SMARTSM003894.3E-16165227IPR001356Homeobox domain
SuperFamilySSF466896.53E-18166231IPR009057Homeodomain-like
CDDcd000861.19E-15167224No hitNo description
Gene3DG3DSA:1.10.10.602.9E-17167221IPR009057Homeodomain-like
PfamPF000463.2E-15167221IPR001356Homeobox domain
PROSITE patternPS000270198221IPR017970Homeobox, conserved site
SMARTSM003402.8E-21223266IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-11223257IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEEMKNKQRG LEWLKTMAND DTTGLALGVG LSMAMPATAL HEDDQKNAPL QIEPLAFRPI  60
AARVGTAPAP SAPFLWFMPK NCREEVTVAE TNPSEALRGG IDMNLVPSSN ESEYSSVLQA  120
DGLRAVDNGP MSVKRERERA FDLEADRDRT CDVSSRTSDE EEIGSTRKKL RLSKEQSALL  180
EESFLEHSTL NPKQKNALAK ALNLQPRQVE VWFQNRRART KLKQTEVDCE VLKRCCENLT  240
EENRRLQKEL QELRALKAVP PQCVIGQDNY YMPMPATTLT MCPSCERVAT MDNSRSLPFS  300
KSRISQFAQQ SAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171TRKKLRL
2215223RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1008010.0BT100801.1 Picea glauca clone GQ0045_B13 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379713.13e-88homeobox-leucine zipper protein HAT4-like
TrEMBLA9NX560.0A9NX56_PICSI; Uncharacterized protein
STRINGPP1S42_219V6.11e-87(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-67homeobox from Arabidopsis thaliana