PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028435-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-YC
Protein Properties Length: 215aa    MW: 25035 Da    PI: 6.9167
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028435-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC168.86.5e-53711751102
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       ql++fw++q   +e+ ++fk+h+lPlarikki+k+dedvkmisaeaPvl+skacelfileltlrswlh+eenkrrtl+++dia a++r d+ d
  PSME_00028435-RA  71 QLQMFWQQQmqeMEQIAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLD 163
                       89*****99888999****************************************************************************** PP

             NF-YC  91 flvdivprdelk 102
                       fl+divprde+k
  PSME_00028435-RA 164 FLLDIVPRDEVK 175
                       *********875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.53E-3165165IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-3687156IPR009072Histone-fold
PfamPF008086.0E-2193156IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
GCDLVSFTAM EGKYPHLQSS PPPPVSHGSS SLMHNSIFQQ QQPQMPLQHH QQQLQVSMQP  60
HLHYMQIQKQ QLQMFWQQQM QEMEQIAEFK QHQLPLARIK KIMKSDEDVK MISAEAPVLF  120
SKACELFILE LTLRSWLHTE ENKRRTLQRN DIAGAISRGD VLDFLLDIVP RDEVKHMMAA  180
QQAMSQQLIP HQPLMPDQQL MYQPPQNILE VKDKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-4979171395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149RRTLQRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0850830.0EF085083.1 Picea sitchensis clone WS0296_J03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NUT06e-93A9NUT0_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.12e-50nuclear factor Y, subunit C1