PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00028455-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HD-ZIP

Protein Properties

Length: 250aa MW: 28469.9 Da PI: 5.2569

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00028455-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	5e-18	71	122	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t eq+++Le+ F+ + + +++eeLA+ lgL rq+ vWFqNrRa++k PSME_00028455-RA 71 RRLTIEQVRALERSFQLGNMVESRSKEELARALGLHPRQIAVWFQNRRARWK 122 48999**********************************************9 PP
2	HD-ZIP_I/II	113.3	1.5e-36	69	159	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k rrl+ eqv++LE+sF+ + +e++ K+elar+Lgl+prq+avWFqnrRAR+ktkqlEkd+ +Lk++y++ k++ ++L +e+++L++e++ PSME_00028455-RA 69 KSRRLTIEQVRALERSFQLGNMVESRSKEELARALGLHPRQIAVWFQNRRARWKTKQLEKDFGVLKQEYESFKTRYHTLLAENQKLQSEIQ 159 88*************************************************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.97E-19	53	126	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.601	64	124	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-18	65	128	IPR009057	Homeodomain-like
SMART	SM00389	4.5E-18	67	128	IPR001356	Homeobox domain
CDD	cd00086	3.97E-15	68	125	No hit	No description
Pfam	PF00046	2.2E-15	71	122	IPR001356	Homeobox domain
PRINTS	PR00031	6.0E-6	95	104	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	99	122	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.0E-6	104	120	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.4E-13	124	163	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
LSISGGGLQS NLKRAAEEED AALGLASKVR SHNMERAVNS NSLFDSSTAP QSLEISSSQS 60 VLNYNGMKKS RRLTIEQVRA LERSFQLGNM VESRSKEELA RALGLHPRQI AVWFQNRRAR 120 WKTKQLEKDF GVLKQEYESF KTRYHTLLAE NQKLQSEIQI LRSINDQNKK DKEIMQGDGQ 180 IDFNIVEELK DECCCLGLSN REDNLTQQAS IEETCGQSIS VALEEEDCYC NMGERSGFMF 240 VDDYWTPGFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	124	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-34	HD-ZIP family protein