PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028456-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 234aa    MW: 27566.8 Da    PI: 6.4039
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028456-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.29.2e-1657108556
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++t eq+++Le+ F+ ++ +    +eeLA+ lgL  rq+ +WFqNrR ++k
  PSME_00028456-RA  57 RRLTIEQVRALERSFQLENMVESWIKEELARALGLHLRQIAIWFQNRRSRWK 108
                       48999**********************************************9 PP
2HD-ZIP_I/II102.73.1e-3355145292
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       k rrl+ eqv++LE+sF+ e+ +e+  K+elar+Lgl+ rq+a+WFqnrR R+ktkqlEkd+++Lk++y++ k++ ++L +e+++L++e++
  PSME_00028456-RA  55 KSRRLTIEQVRALERSFQLENMVESWIKEELARALGLHLRQIAIWFQNRRSRWKTKQLEKDFSVLKQEYESFKTRYHTLLAENQKLQSEIQ 145
                       88*************************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-1837112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-1743110IPR009057Homeodomain-like
PROSITE profilePS5007115.69450110IPR001356Homeobox domain
SMARTSM003898.4E-1653114IPR001356Homeobox domain
CDDcd000868.01E-1354111No hitNo description
PfamPF000463.5E-1357108IPR001356Homeobox domain
PRINTSPR000314.9E-58190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000314.9E-590106IPR000047Helix-turn-helix motif
PfamPF021833.9E-13110149IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
AWGHRNWDLN QPGKVRSHNM ERAVNSNSHF DSSTVPQSLE ISSSQSVHNY NGMKKSRRLT  60
IEQVRALERS FQLENMVESW IKEELARALG LHLRQIAIWF QNRRSRWKTK QLEKDFSVLK  120
QEYESFKTRY HTLLAENQKL QSEIQILRSI NDQNKKDKEI MQGDGQIDFN IVEELKEECC  180
GLSNREDNLT QQASIEETFG QSILVALEEK DCYCNMGERS NFMFVDDYWT PGFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110RRSRWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-31HD-ZIP family protein