PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028622-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 551aa    MW: 60803.3 Da    PI: 6.6956
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028622-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-18563357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PSME_00028622-RA  5 KYVRYTAEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                      5679*****************************************************97 PP
2START87.92.2e-281532802127
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  W +++ +++g++ + +++ s++++g a+ra+ +v  ++   v+e+l+d+  W +++++++++ v ++g  g+++
  PSME_00028622-RA 153 IAEETLTEFLSKAKGNAVEWIQMPGMKPGPDAIGIVTISHGCTGVAARACSLVGIDPS-KVAEILKDRTSWLRDCRSVDVVTVFTTGngGTIE 244
                       789*******************************************************.8888888888************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEE CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivd 127
                       l +++++a+++l+p Rdf+++Ry+  l++g++v+++
  PSME_00028622-RA 245 LLYMQMYAPTTLAPaRDFWTLRYTSVLEDGSLVLCS 280
                       **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.661164IPR001356Homeobox domain
SMARTSM003892.2E-15268IPR001356Homeobox domain
CDDcd000864.60E-16565No hitNo description
SuperFamilySSF466893.17E-16568IPR009057Homeodomain-like
PfamPF000466.9E-16563IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-18763IPR009057Homeodomain-like
CDDcd146861.45E-65796No hitNo description
PROSITE profilePS5084813.16143326IPR002913START domain
SuperFamilySSF559611.79E-21148325No hitNo description
Gene3DG3DSA:3.30.530.204.7E-10152280IPR023393START-like domain
SMARTSM002344.5E-7152357IPR002913START domain
PfamPF018521.6E-25153280IPR002913START domain
PfamPF086709.1E-45421550IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MDQGKYVRYT AEQVEALERL YHDCPKPSSI RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKEASRL QAVNRKLSAM NKLLMEENDR LQKQVSQLVY ENGYFRQQLQ NASIATTDTS  120
CESVVTSVKH QQQNQLTPRD PPRDASSAGL LSIAEETLTE FLSKAKGNAV EWIQMPGMKP  180
GPDAIGIVTI SHGCTGVAAR ACSLVGIDPS KVAEILKDRT SWLRDCRSVD VVTVFTTGNG  240
GTIELLYMQM YAPTTLAPAR DFWTLRYTSV LEDGSLVLCS GVDENAVGAC SELIFAPIDA  300
SLADNSPLLP SGFRVVPSDS GMDGSSPNRT LDLASALEIG SAGTRTSVDY GGNNSTFRSV  360
LTIAFQFTFE NHLRENVATM ARQYLRSVVA SVQRVSMALA PSRLGSHLGP RLPPGTPEAL  420
TLAQLLRPNT EVNESVLKTL WHHSDAIMCC SLKSLPVFTF ANQAGLDMLE TTLVALQDIS  480
LEKILDDNGR KSFCSDIAQI MQQGYAYLPA GVCVSSMGRP ASYDRAIAWK VLNDEENPHC  540
IAFMFMNWSF V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4778410.0KC477841.1 Larix kaempferi class III homeodomain leucine zipper protein 32 (HDZ32) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021276132.11e-172homeobox-leucine zipper protein ATHB-8
RefseqXP_021276133.11e-172homeobox-leucine zipper protein ATHB-8
SwissprotQ391231e-164ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLR4UMI30.0R4UMI3_9SPER; Class III homeodomain leucine zipper protein 32
STRINGEOY297711e-171(Theobroma cacao)
STRINGXP_010267183.11e-171(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.11e-157homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]