PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00028764-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 181aa MW: 20409.2 Da PI: 8.3029

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00028764-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	303.9	1.3e-93	2	174	36	217
VOZ 36 tlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrs 128 tla neg+pg++pvl p+gidlkdg+lfaalsak+q k vgipecegaatak pwna ge++rew+ffdkprrafesgnrkqrs PSME_00028764-RA 2 TLASNEGAPGMRPVLHPGGIDLKDGPLFAALSAKTQEKAVGIPECEGAATAKYPWNAY---------GESMREWIFFDKPRRAFESGNRKQRS 85 79****************************************************95.........9********************* PP VOZ 129 lpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 lpdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewh+yeyein++da+alyrlel +v +kk++kgkv d+l+dlq++lg+l+a PSME_00028764-RA 86 LPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHIYEYEINDCDACALYRLELNMVCSKKNTKGKVGGDPLVDLQHQLGKLSA 174 *************************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MTLASNEGAP GMRPVLHPGG IDLKDGPLFA ALSAKTQEKA VGIPECEGAA TAKYPWNAYG 60 ESMREWIFFD KPRRAFESGN RKQRSLPDYS GRGWHESRKQ VIKDFGGLKR SYYMDPQPST 120 QFEWHIYEYE INDCDACALY RLELNMVCSK KNTKGKVGGD PLVDLQHQLG KLSAEFSWVA 180 K

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115389	1e-47	BT115389.1 Picea glauca clone GQ03615_G11 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010904889.1	5e-96	transcription factor VOZ1
Refseq	XP_010916038.1	5e-96	transcription factor VOZ1 isoform X1
Refseq	XP_019705069.1	4e-96	transcription factor VOZ1 isoform X2
Swissprot	Q9SGQ0	6e-90	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A0K9NP50	6e-95	A0A0K9NP50_ZOSMR; Vascular plant one zinc finger protein
TrEMBL	A0A199VTN3	3e-96	A0A199VTN3_ANACO; Transcription factor VOZ1
TrEMBL	A0A426X3X9	2e-95	A0A426X3X9_ENSVE; Uncharacterized protein
STRING	ERN14021	2e-95	(Amborella trichopoda)
STRING	XP_008782092.1	7e-95	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	2e-92	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]