PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028840-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 230aa    MW: 26012.2 Da    PI: 10.072
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028840-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.41.1e-26132189259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKY +K vk+s++pr+Y+rC+ ++C vkk ver+a+d+ +v++ Y g+Hnhe
  PSME_00028840-RA 132 EDGYKWRKYRKKFVKNSPNPRNYFRCSDNNCGVKKTVERDARDKGIVITSYLGKHNHE 189
                       8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-28119191IPR003657WRKY domain
SuperFamilySSF1182902.35E-24123191IPR003657WRKY domain
PROSITE profilePS5081127.841126191IPR003657WRKY domain
SMARTSM007743.6E-27131190IPR003657WRKY domain
PfamPF031061.1E-20132189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTTLNRGNSA PTNVAKEAGY FRNVNGSRNL CYVREAYCGL QYKALSLNSH LCSFQIQLNS  60
GLAVLIGSDS SISHSNSESN AQNRDPAKET QPKRNSKIVY VLNRSPNKSR KRKAEQGAKY  120
AFLTRSDTDI LEDGYKWRKY RKKFVKNSPN PRNYFRCSDN NCGVKKTVER DARDKGIVIT  180
SYLGKHNHES PSVIYYTLDP EILVQLPRQT TGSPIFSSMN YVPGCSEQHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-221241921078Probable WRKY transcription factor 4
2lex_A4e-221241921078Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R4C97e-44A0A0D6R4C9_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.13e-29WRKY DNA-binding protein 51