PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028879-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ARF
Protein Properties Length: 889aa    MW: 98448.1 Da    PI: 6.2919
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028879-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.95e-10175235156
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEET CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkks 56 
                       f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++gr+W++++i+r+ +
  PSME_00028879-RA 175 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGREWRFRHIFRGMD 235
                       99****************************963.3445679***************997655 PP
2Auxin_resp128.44.3e-42272353182
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       +aha++tks+F+++YnPr+s++eFv++++k++k++++++s+GmRfkm+feted+ err++Gt+vg+sd+dp+rWpnSkWrs 
  PSME_00028879-RA 272 VAHAVATKSMFHIFYNPRTSPTEFVIPYHKYVKSFNHSFSIGMRFKMRFETEDATERRYTGTIVGISDVDPMRWPNSKWRSF 353
                       79******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-22167233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-29167242IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-10173243No hitNo description
SMARTSM010190.0036175248IPR003340B3 DNA binding domain
PfamPF023623.7E-8175235IPR003340B3 DNA binding domain
PfamPF065073.7E-38272354IPR010525Auxin response factor
SuperFamilySSF542773.43E-11759837No hitNo description
PROSITE profilePS5174525.001761843IPR000270PB1 domain
PfamPF023093.5E-6809850IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MESGLNDPHG LQRHSSDDAN GDGEKRIVVD KGSSVCPELW HACAGPLISL PPKGSRVVYF  60
PQGHLEQIAD NELHKVGRGS FLNVTQAVAP MAEEAASAAS LNIPPSSVSQ VVDQQMLSYK  120
LPPQILCRVL NVNLHADQEI DEVYAQLTLV PDSEKSEKCM EEQPPIPPSS TPHMFCKTLT  180
ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR PSQELVAKDL HGREWRFRHI FRGMDENGEL  240
RLGIRRASQQ QSSVPSSVLS SHGIHSGVLA AVAHAVATKS MFHIFYNPRT SPTEFVIPYH  300
KYVKSFNHSF SIGMRFKMRF ETEDATERRY TGTIVGISDV DPMRWPNSKW RSFKVGWDEH  360
AAQERQERVS PWEIEPFTSA TGLNALPGPR VKRLRTSFPS TAPDLSIPDG DTLSDFGESS  420
RFQKVLQGQE MSPLKTPFRT DRMDLMKYRV CDSKALDTEH EVSGGARRTG HEIWPPSGRT  480
DISPSSDLSC DKRKYGRLYG LETPSSINCP SAKSPDTNQQ QLRYFTQLQG RENAVALPLN  540
TGISTASASL RSPLFKSPPV NNSELHLSTI SPRSVVSDSR KSDLYWDFWQ PFPSGQTPSQ  600
TASAIPKTAA RWKTSSTSPC LSEDTEGASG EARISPDYPL KEPLYLSFKQ HHLASETTCI  660
QAKDISKVKG ERNCKLFGFS LLKEPVCVDD PISSTEDGVS SDGGLHVPSG DGTFQTAHSK  720
DSDQSEKELH NHYGHEITLR SMEQEISSYA KLRNSVQASG RSCTKVHKQG NAVGRAVDLS  780
KLRGYDELIR ELEHLFNMEG LLSTPEKGWH IVYTDNEGDI MLVGDDPWQE FCNIVCKILI  840
CTQEEVQKMT PGMFSEDAQS CFEQQPTTVE VSKCSIDGQD SSSPLGSGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1113437918357Auxin response factor 1
4ldw_A1e-1113437918357Auxin response factor 1
4ldw_B1e-1113437918357Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6786620.0EF678662.1 Picea sitchensis clone WS02930_G10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRW70.0B8LRW7_PICSI; Auxin response factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-128auxin response factor 2