PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00028885-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WRKY

Protein Properties

Length: 713aa MW: 77705.6 Da PI: 6.6473

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00028885-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.3	1.7e-29	351	408	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK kg++fpr+YYrCt + gCpv+k+v+r+++d +++++tYeg Hnh+ PSME_00028885-RA 351 DGCQWRKYGQKIAKGTPFPRAYYRCTVSpGCPVRKQVQRCHKDMSILITTYEGAHNHP 408 9***********************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.8E-31	334	410	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	342	410	IPR003657	WRKY domain
PROSITE profile	PS50811	28.828	344	410	IPR003657	WRKY domain
SMART	SM00774	6.8E-36	349	409	IPR003657	WRKY domain
Pfam	PF03106	1.4E-26	351	408	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MAVIDEARIY VSHIAEQESF FRQESININL NLGKNMAMEG RLDRVIEIDL SVKLGEENAE 60 GDENSLLDFK EKIKSPLVHK LEQSEDEEGK AAGEISDNNY FEKLASFRVP TPITSRTDGQ 120 TKIESLQIEI GRLKEENENL KMDLSRVMNN YHNLQMHLFS VSQQQREDKA QLSEQDLQHR 180 QDESQLLSLS LCTRPSSKGC KEETMKPAEN GKLQLIENKG RNVRSINIVE GSVDNLNGLN 240 LSLDFKEDET SQDSDNGSLL AKSSTQAGSD VGLVKKGSKD LSNAERQACL SAENSCQVED 300 ENMYEQGSGS WLPNKIMKTL YDTAKTSKAA PLMRKARVSV RVRCETPTMI DGCQWRKYGQ 360 KIAKGTPFPR AYYRCTVSPG CPVRKQVQRC HKDMSILITT YEGAHNHPLP IAATAMASTT 420 SAAACMLLSG STSSLEAMNA NSYFLGTDNN RMNQVLGSNP DITTSMNSFS LITLDLTNNP 480 NSQSNLRLGA TGTPLARQSL LSHKSSIMGS DHSLRPPSGS NLWNNNVYYN HQPHSYNKPS 540 STLATKYNDV ASQQFQQRSS PIDSSSAIQG ALARSSTQTL LQNIMAEAAA KCSNSSGSQY 600 SLADTVGAAT AAITSDPNFT AALASAITST ISQGNPQSQS GASDRALISA NGDPVSGPGK 660 WKELMLALYA TVNAASSKAS PYDTSQLNRI FSSASFPFST KQWSGSATNN QNL

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MAVIDEARIY VSHIAEQESF FRQESININL NLGKNMAMEG RLDRVIEIDL SVKLGEENAE  60
GDENSLLDFK EKIKSPLVHK LEQSEDEEGK AAGEISDNNY FEKLASFRVP TPITSRTDGQ  120
TKIESLQIEI GRLKEENENL KMDLSRVMNN YHNLQMHLFS VSQQQREDKA QLSEQDLQHR  180
QDESQLLSLS LCTRPSSKGC KEETMKPAEN GKLQLIENKG RNVRSINIVE GSVDNLNGLN  240
LSLDFKEDET SQDSDNGSLL AKSSTQAGSD VGLVKKGSKD LSNAERQACL SAENSCQVED  300
ENMYEQGSGS WLPNKIMKTL YDTAKTSKAA PLMRKARVSV RVRCETPTMI DGCQWRKYGQ  360
KIAKGTPFPR AYYRCTVSPG CPVRKQVQRC HKDMSILITT YEGAHNHPLP IAATAMASTT  420
SAAACMLLSG STSSLEAMNA NSYFLGTDNN RMNQVLGSNP DITTSMNSFS LITLDLTNNP  480
NSQSNLRLGA TGTPLARQSL LSHKSSIMGS DHSLRPPSGS NLWNNNVYYN HQPHSYNKPS  540
STLATKYNDV ASQQFQQRSS PIDSSSAIQG ALARSSTQTL LQNIMAEAAA KCSNSSGSQY  600
SLADTVGAAT AAITSDPNFT AALASAITST ISQGNPQSQS GASDRALISA NGDPVSGPGK  660
WKELMLALYA TVNAASSKAS PYDTSQLNRI FSSASFPFST KQWSGSATNN QNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-23	336	410	1	74	WRKY transcription factor 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	7e-45	WRKY DNA-binding protein 9