PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00028886-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WRKY

Protein Properties

Length: 728aa MW: 79387.8 Da PI: 5.0542

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00028886-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.8	1.2e-29	355	412	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK kg+++pr+YYrCt + gCpv+k+v+r++ed +++++tYeg Hnh+ PSME_00028886-RA 355 DGCQWRKYGQKIAKGNPCPRAYYRCTVSpGCPVRKQVQRCHEDMSILITTYEGAHNHP 412 9***********************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.5E-32	338	414	IPR003657	WRKY domain
SuperFamily	SSF118290	9.55E-27	346	414	IPR003657	WRKY domain
PROSITE profile	PS50811	29	348	414	IPR003657	WRKY domain
SMART	SM00774	2.4E-36	353	413	IPR003657	WRKY domain
Pfam	PF03106	9.8E-27	355	412	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence Send to blast
MAVEGDRSGS HINQQKSFLG QESINVKPNL GKKMAMEGRL DRVIEIDLSI KLEEENGEGD 60 EDSSELDLKE KIISPLIYNL ELQSEDEESE AAETYKQISD NDYFDKTASF RVPAPITSRI 120 DEQTKIEALQ MEMDRLKEEN ENLKMDLSRV MTNFHNLQMH LFSVSQKQRE DKSQLSEQDS 180 QRRQDESQLL SLSLCTKPSS EETIEETTSK PPESGNLHLI EKQGRNARSS NIDGVSVDNL 240 NGLNLSLDFK EEETSRDSDE GSHSAKSSTQ AGSDVGLVQK GSKDLSNAEG QACVSPENSS 300 QVKDENMYEQ EGGSWPPNKV MKTSHDTIKN SEVAPLMRKA RVSVRARCEA PTMIDGCQWR 360 KYGQKIAKGN PCPRAYYRCT VSPGCPVRKQ VQRCHEDMSI LITTYEGAHN HPLPIAATAM 420 ASTTSAAACM LLSGSTSSLE AMNSNSYFLG VGNNRMEQFL GSNPSITTSM NSFPSITLDL 480 TNNPNSQSNL RLGDAGTPLA TSFPSQFGYP SVGQSLLSHN NSSIMGSDHS FRPPSGSNLW 540 NNSVYYSQPH SYNKPSTLGT QYNDLASHQF QQRSPLIDPS RAIQGSVLPR SSTQTLIQNI 600 MAEAAAKCSI NSSGSQHSLS DTVNAATAAI TSDPNFTAAL ANAITSIISL EANLQPQSGA 660 SDRSLISASS EQLLGPGKWK ESMLALYATV HDASFKASPH QASQSNSILS TASFPFSTKQ 720 WPGSATDN

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence Send to blast

MAVEGDRSGS HINQQKSFLG QESINVKPNL GKKMAMEGRL DRVIEIDLSI KLEEENGEGD  60
EDSSELDLKE KIISPLIYNL ELQSEDEESE AAETYKQISD NDYFDKTASF RVPAPITSRI  120
DEQTKIEALQ MEMDRLKEEN ENLKMDLSRV MTNFHNLQMH LFSVSQKQRE DKSQLSEQDS  180
QRRQDESQLL SLSLCTKPSS EETIEETTSK PPESGNLHLI EKQGRNARSS NIDGVSVDNL  240
NGLNLSLDFK EEETSRDSDE GSHSAKSSTQ AGSDVGLVQK GSKDLSNAEG QACVSPENSS  300
QVKDENMYEQ EGGSWPPNKV MKTSHDTIKN SEVAPLMRKA RVSVRARCEA PTMIDGCQWR  360
KYGQKIAKGN PCPRAYYRCT VSPGCPVRKQ VQRCHEDMSI LITTYEGAHN HPLPIAATAM  420
ASTTSAAACM LLSGSTSSLE AMNSNSYFLG VGNNRMEQFL GSNPSITTSM NSFPSITLDL  480
TNNPNSQSNL RLGDAGTPLA TSFPSQFGYP SVGQSLLSHN NSSIMGSDHS FRPPSGSNLW  540
NNSVYYSQPH SYNKPSTLGT QYNDLASHQF QQRSPLIDPS RAIQGSVLPR SSTQTLIQNI  600
MAEAAAKCSI NSSGSQHSLS DTVNAATAAI TSDPNFTAAL ANAITSIISL EANLQPQSGA  660
SDRSLISASS EQLLGPGKWK ESMLALYATV HDASFKASPH QASQSNSILS TASFPFSTKQ  720
WPGSATDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-21	340	414	1	74	WRKY transcription factor 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	4e-51	WRKY family protein