PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00028898-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 385aa MW: 43060.7 Da PI: 6.3138

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00028898-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	392.5	1.1e-120	162	378	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc+r aqg++w+qdycs fh tla neg+p ++pvlrp+gidlkdg+lfa+lsak+q k vgipeceg atakspwna PSME_00028898-RA 162 PPPAAFLGPKCALWDCSRLAQGTKWCQDYCSDFHMTLASNEGAPRMRPVLRPGGIDLKDGPLFASLSAKTQEKAVGIPECEGVATAKSPWNAY 254 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rewlffdk r afesgnrkq slpdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+aly le PSME_00028898-RA 255 ELFDMYVLEGESMREWLFFDKLRWAFESGNRKQCSLPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYILE 347 ***************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00028898-RA 348 LKMVCSKKNTKGKVGGDPLVDLQHQLGKLSA 378 ***************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MSKAENFNSG ISFTMSRSLE ALRACCDDKH AGKRAGSSSM DSIFVQMGSG RRYFHGLFPW 60 PYQVKLRRNT GLSSVKVKIS VSNLQATVGE ANIEHQENNN YVQTSEQLPP NLVEGLEVTS 120 GLEGGQINFH QDYIPAAQPI FTLTGEEETS PVFNGPQPGL CPPPAAFLGP KCALWDCSRL 180 AQGTKWCQDY CSDFHMTLAS NEGAPRMRPV LRPGGIDLKD GPLFASLSAK TQEKAVGIPE 240 CEGVATAKSP WNAYELFDMY VLEGESMREW LFFDKLRWAF ESGNRKQCSL PDYSGRGWHE 300 SRKQVIKDFG GLKRSYYMDP QPSTQFEWHL YEYEINDCDA CALYILELKM VCSKKNTKGK 360 VGGDPLVDLQ HQLGKLSAEF SWVEK

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MSKAENFNSG ISFTMSRSLE ALRACCDDKH AGKRAGSSSM DSIFVQMGSG RRYFHGLFPW  60
PYQVKLRRNT GLSSVKVKIS VSNLQATVGE ANIEHQENNN YVQTSEQLPP NLVEGLEVTS  120
GLEGGQINFH QDYIPAAQPI FTLTGEEETS PVFNGPQPGL CPPPAAFLGP KCALWDCSRL  180
AQGTKWCQDY CSDFHMTLAS NEGAPRMRPV LRPGGIDLKD GPLFASLSAK TQEKAVGIPE  240
CEGVATAKSP WNAYELFDMY VLEGESMREW LFFDKLRWAF ESGNRKQCSL PDYSGRGWHE  300
SRKQVIKDFG GLKRSYYMDP QPSTQFEWHL YEYEINDCDA CALYILELKM VCSKKNTKGK  360
VGGDPLVDLQ HQLGKLSAEF SWVEK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260370.1	1e-129	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-118	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1U8A0G4	1e-128	A0A1U8A0G4_NELNU; transcription factor VOZ1
STRING	XP_010260370.1	1e-129	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-120	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]