PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029196-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family AP2
Protein Properties Length: 692aa    MW: 76153.5 Da    PI: 6.5134
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029196-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.84.8e-07252273122
               AP2   1 sgykGVrwdkkrgrWvAeIrdp 22 
                       s+y+GV++++++grW+++I+ +
  PSME_00029196-RA 252 SQYRGVTFYRRTGRWESHIWAY 273
                       78*****************984 PP
2AP2414.6e-13325375155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ + +g
  PSME_00029196-RA 325 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEIEAARAYDQAAIRCNG 375
                       89********.7******5553..2.26**********99**********98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-5252291IPR016177DNA-binding domain
SMARTSM003801.9E-8253296IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-16325385IPR016177DNA-binding domain
PfamPF008471.6E-8325375IPR001471AP2/ERF domain
CDDcd000186.66E-24325385No hitNo description
Gene3DG3DSA:3.30.730.102.8E-15326383IPR001471AP2/ERF domain
SMARTSM003801.5E-29326389IPR001471AP2/ERF domain
PROSITE profilePS5103215.04326383IPR001471AP2/ERF domain
PRINTSPR003671.3E-5327338IPR001471AP2/ERF domain
PRINTSPR003671.3E-5365385IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MSTCEAPGTI RTVWDLNLTP AAPEDVFAVN STYPNFLREP EEVNAIFSKA EESGSVCDET  60
SINPAIAVAK SELEPWTSGT GDHLFIRSAE NCRDDSGTSN SSVINAPVID NRSKNDSSLY  120
LECEDSANQA IESRSRSSSD INNLGQSKTV NSKLFGCFIT VNSLAGAEIN THSKGQPDTC  180
IMHQFSVVNR TPDSVSSLPL EEIRGPVNLF SRSIWGDHLA SSQTDSSGTP KPLTVPIQAV  240
KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WAYDRAAIKF RGQDADINFN LSDYEEDLKQ  300
LTNLTKEEFV HILRRQSNGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDNEI  360
EAARAYDQAA IRCNGREAVT NFDPSIYQND LLREGVREGD SASVNQNLDL SLGISAPTVL  420
DTSVSGDHKI GGLKTKTSAN ILVEPDWKKA RCAISKPEDG SQQTQLEAPL SYEQLDQYVG  480
LQDRETFSSQ SKQTTFTFSP QYQIHHPNSE KIQVTDALAY NPLVFLPNPN DESRQLALEQ  540
QGLWSRVCPL PFPNYKLHNP TGELQGQGGS GLSPLHSPID HQSGWPWKFY ANDSSASMLA  600
AASSGFSPQA QTTPAHPSDW LHKLQGLQYP STQSVGTPLS DLKPSFQRQN LHMGMGTEAN  660
SSGQVLGLSL SISTKSKAEP NSSKGIPMVR SP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3552750.0KU355275.1 Larix kaempferi APETALA2-like protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A173G8U90.0A0A173G8U9_9SPER; APETALA2-like protein 2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-80AP2 family protein