PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00029303-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HSF

Protein Properties

Length: 180aa MW: 20968.1 Da PI: 10.077

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00029303-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	68	2e-21	3	63	33	102
HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 33 eeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 ++efa +vLp+yF hsn++SFvRQLn+YgF+k+ + + eF ++ Fkkg+k+ll++i+r+k PSME_00029303-RA 3 PREFAASVLPRYFNHSNLSSFVRQLNTYGFRKIVHGR---------CEFGNELFKKGQKHLLSHIQRRKP 63 689*****************************999.........67*****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.9E-15	2	61	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.2E-20	2	61	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.36E-17	3	61	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	9.2E-18	3	61	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.1E-9	10	22	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.1E-9	23	35	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MRPREFAASV LPRYFNHSNL SSFVRQLNTY GFRKIVHGRC EFGNELFKKG QKHLLSHIQR 60 RKPSISSQTM ELAWQMEYDQ SLNPNSSSAV QDFDVPTAAP CLFEEHVILK RNNLLLLSEI 120 DRLQNICVRD FKLFIRHNTR DPPLIDMHRK IDKVSSNVSM RDVSEEISMS PPKLFGVPLR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d8k_B	1e-14	6	64	39	108	Heat shock factor protein 2
5d8l_B	1e-14	6	64	39	108	Heat shock factor protein 2
5d8l_D	1e-14	6	64	39	108	Heat shock factor protein 2
5d8l_F	1e-14	6	64	39	108	Heat shock factor protein 2
5d8l_H	1e-14	6	64	39	108	Heat shock factor protein 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	H9WK88	1e-47	H9WK88_PINTA; Uncharacterized protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	2e-25	heat shock transcription factor B2A