PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00029335-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 447aa MW: 50219.4 Da PI: 5.4944

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00029335-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	407.8	2.1e-125	224	440	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc+rpaqg++w+qdycs fh tla neg+pg++pvl p+gidlkdg+lfaalsak+q k vgipecegaatakspwna PSME_00029335-RA 224 PPPAAFLGPKCALWDCSRPAQGTKWCQDYCSDFHMTLASNEGAPGMRPVLHPGGIDLKDGPLFAALSAKTQEKAVGIPECEGAATAKSPWNAY 316 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rewlff+kpr fesgnrkqrslpdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+alyrle PSME_00029335-RA 317 ELFDMYVLEGESMREWLFFEKPRWDFESGNRKQRSLPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYRLE 409 ***************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk++kgkv d+l+dlq++l++l+a PSME_00029335-RA 410 LKMVCSKKNTKGKVGGDPLVDLQHQLVKLSA 440 **************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.70.330	5.1E-5	60	104	IPR012677	Nucleotide-binding alpha-beta plait domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
AGNFNSGISF TMSRSPEALR ACCDDKQAGK RDGSSSMDSI FVQMGSGRRY FHGIFPWPYQ 60 YVDYHMGAES GYVRFEQPEM VQKPRAAAVK LRRNTGLRSV KVKISVGNLQ ETDFLVDDLH 120 TPEKDFERVS RCTNIGEGLH QNSYPQTSVQ LPANIEHQEN NNYVQTSEQL PPNLVEGLEV 180 TSGLEGGQIN FDQDYIPTAQ PIFTLNGEEE TSPVFNGPQP GLCPPPAAFL GPKCALWDCS 240 RPAQGTKWCQ DYCSDFHMTL ASNEGAPGMR PVLHPGGIDL KDGPLFAALS AKTQEKAVGI 300 PECEGAATAK SPWNAYELFD MYVLEGESMR EWLFFEKPRW DFESGNRKQR SLPDYSGRGW 360 HESRKQVIKD FGGLKRSYYM DPQPSTQFEW HLYEYEINDC DACALYRLEL KMVCSKKNTK 420 GKVGGDPLVD LQHQLVKLSA EFSWVAK

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

AGNFNSGISF TMSRSPEALR ACCDDKQAGK RDGSSSMDSI FVQMGSGRRY FHGIFPWPYQ  60
YVDYHMGAES GYVRFEQPEM VQKPRAAAVK LRRNTGLRSV KVKISVGNLQ ETDFLVDDLH  120
TPEKDFERVS RCTNIGEGLH QNSYPQTSVQ LPANIEHQEN NNYVQTSEQL PPNLVEGLEV  180
TSGLEGGQIN FDQDYIPTAQ PIFTLNGEEE TSPVFNGPQP GLCPPPAAFL GPKCALWDCS  240
RPAQGTKWCQ DYCSDFHMTL ASNEGAPGMR PVLHPGGIDL KDGPLFAALS AKTQEKAVGI  300
PECEGAATAK SPWNAYELFD MYVLEGESMR EWLFFEKPRW DFESGNRKQR SLPDYSGRGW  360
HESRKQVIKD FGGLKRSYYM DPQPSTQFEW HLYEYEINDC DACALYRLEL KMVCSKKNTK  420
GKVGGDPLVD LQHQLVKLSA EFSWVAK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260370.1	1e-131	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-120	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1U8A0G4	1e-130	A0A1U8A0G4_NELNU; transcription factor VOZ1
STRING	XP_010260370.1	1e-130	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-123	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]