PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029446-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 305aa    MW: 34452.1 Da    PI: 9.6151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029446-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.2e-14103155155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +r +h+ +E++RR+++++ f++Lr+llP+ +     +K   ++ +  Av+YI++Lq
  PSME_00029446-RA 103 KRSNHKLIEKQRRKDMKTLFSRLRSLLPEeN---LRGKRAESDQVLGAVNYICHLQ 155
                       79***************************66...9999999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.3E-14100170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-12101159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.551102154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-10102159No hitNo description
PfamPF000103.7E-11103155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-5108160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSISSGFQSV FLPCNDGITM FVNADSLSSS NPFLIVQPLE DPPTYNTHHA QRSNLVINCN  60
TGSPFHHQDL LDRPSLMRTA CNSSFPTHGR SWRSLTRTAP TDKRSNHKLI EKQRRKDMKT  120
LFSRLRSLLP EENLRGKRAE SDQVLGAVNY ICHLQQKIED VSRQRDRMKD NLYRKEQVSL  180
VGMKLSKNKK SCSKHPRLQG SDGEFPTVKI NCIGAAVKIS LNAFEGQIVY SDLLLALEDC  240
RLEVVNATSS SINNTVFHTI YNKVSDVDNF NMNGLYDKLR RLTSDDRTSG PSKLATNVCC  300
RTNEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH53e-57B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.15e-21bHLH family protein