PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029447-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 333aa    MW: 37352.5 Da    PI: 9.1813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029447-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.42.9e-14103155155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +r +h+ +E++RR+++++ f++Lr+llP+ +     +K   ++ +  Av+YI++Lq
  PSME_00029447-RA 103 KRSNHKLIEKQRRKDMKTLFSRLRSLLPEeS---LRGKRAESDQVLGAVNYICHLQ 155
                       79***************************55...8999999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.64E-14100169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.90E-11100159No hitNo description
Gene3DG3DSA:4.10.280.108.9E-12101158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.557102154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-11103155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-4108160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSISSGFQSV FLPCNDGISM FVNADSLSSS NPFLIAQPLE DPPTYNTHHA QRSNLVINCN  60
SGSSFHHQDL LDRPSLMRTA CNSSFPTHGR SWRSLTRTAP TDKRSNHKLI EKQRRKDMKT  120
LFSRLRSLLP EESLRGKRAE SDQVLGAVNY ICHLQQKIEG VSRERHRMKD NLYRKEQVSL  180
VGMKLSKNKK SCSKHPRLQG SDGEFPTVKI SCIGAAVKIS LNAFEGQIVY SDLLLALEDC  240
RLEVVNATSS SINNTVFHTI YNKVFSDACG NTIILCVISQ NLKIHISTLL QVSDIDNFNM  300
NGLYDKLRRL TSEDRTSGPS KLATNVCCRT NEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.12e-11bHLH family protein