PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029577-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 776aa    MW: 83834.4 Da    PI: 6.8029
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029577-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.9e-07322342526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f++ GtC++ d C +aHg
  PSME_00029577-RA 322 PCPDFRK-GTCRRSDVCEYAHG 342
                       8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0024846003565IPR002110Ankyrin repeat
CDDcd002043.41E-1437163No hitNo description
SuperFamilySSF484035.29E-1538162IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-1438163IPR020683Ankyrin repeat-containing domain
PfamPF127963.3E-878152IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.46782160IPR020683Ankyrin repeat-containing domain
SMARTSM002480.2382111IPR002110Ankyrin repeat
SMARTSM002480.0046120152IPR002110Ankyrin repeat
PROSITE profilePS5008810.98120155IPR002110Ankyrin repeat
SMARTSM003561.1E-4317343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.601322344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4350380IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.042352376IPR000571Zinc finger, CCCH-type
SMARTSM0035630352375IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MCGGPEHLKP ASPHEEGDRV KMAEKQSIKV KELSESCSSL HELAANNDLI GFKKAMEEEG  60
SKIDEVNFWY GRQNGSNQMV LEQRTPLMVA ALYGSIDALN YILSIYATCG ADVNQACGSD  120
NSTALHCAAV GGSVCAVETV KLLLQSGGDV NCLDAYGRRP ADVIMVSPKL TEVKVKLEGM  180
LNAGGTGQSS SMKVPSIVSG PPGLEAKGLE SMSPSALFPL SVSLEASNHR SGCVHSPTSS  240
PKSMDAIKGF GDVNEKKEYP VDPSFPDIKN SIYTTDEFRM FSFKVRPCSR AYSHDWTECP  300
FVHPGENARR RDPRRYHYSC VPCPDFRKGT CRRSDVCEYA HGVFECWLHP AQYRTRLCKD  360
GTNCSRRVCF FAHTSEELRP LIVSTGSAVP SPRASSSLDM TSVMSPLAPG SPSSVSMMSP  420
FLSNPQQGSV LTPPMSPSAS SVNGYGGWPQ PNVPTLHLPG SNVQTSRLRA ELNARDMPVE  480
DSPRISDYEG QLLNEFSPLS TQARMNAAAA VISGGGNTTT RSGKYKSHGI NTVAPTNLED  540
LFASEVTSPR VAVLEPSIFS QMSPQMQAHK TAHVYMQIQN QMPPPIITQA FSQGITQMPQ  600
AAIEPQSPGH SLMQSPFQSS SYGLGSPGRM SPRCVDVERH NNACGSPLSP AMAATMNSRF  660
AAFVQREKKS HSSRDLGAHV PSSFSDWGSP TGKVDWGVQG EELSKLRKSA SFGPRSYEEP  720
DLSWVQTLVK ETTPDGKDGG NVGCSGETPH KGQIENVDHS VLGAWIEQMQ LDQIVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0703630.0BT070363.1 Picea sitchensis clone WS02722_O11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421436.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_024036574.10.0zinc finger CCCH domain-containing protein 30
TrEMBLC0PPY90.0C0PPY9_PICSI; Uncharacterized protein
STRINGXP_006421436.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain