PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029610-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 165aa    MW: 19208.9 Da    PI: 4.9807
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029610-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.2e-10891561583
                       -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                B3  15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        +++p  f++++ +g++     +t++d +g sW+++   y k++ r v+t+GW+eF+++++ k gD+++ +
  PSME_00029610-RA  89 EVSFPLMFMTKYlSGSQ---GIVTFKDCDGFSWRIEWyAYPKSRLRLVFTTGWSEFASDHNEKYGDILLVE 156
                       5689999**99974442...36**************9455888888********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.82775165IPR003340B3 DNA binding domain
PfamPF023622.7E-989156IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-1189158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-1190163IPR015300DNA-binding pseudobarrel domain
CDDcd100177.29E-1191156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
ISFYNGSNGN MESNMEIREQ VIWTGESWLF LDNETSMMGT KGSFNNRYKP HVGEGLLIPN  60
REMVTDFVKD ILLNILHLQG QSRENALVEV SFPLMFMTKY LSGSQGIVTF KDCDGFSWRI  120
EWYAYPKSRL RLVFTTGWSE FASDHNEKYG DILLVEILNL YYFKV