PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00029667-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 334aa MW: 37324.7 Da PI: 4.7817

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00029667-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19	2.6e-06	295	318	6	29
HHHHHHHHHHHHHHHHHHHCTSCC CS HLH 6 nerErrRRdriNsafeeLrellPk 29 + Er+RR ++N+++ +Lr+l+P PSME_00029667-RA 295 IILERKRRGKLNHWLYTLRSLVPF 318 679********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04784	6.5E-5	54	86	IPR006869	Domain of unknown function DUF547
SuperFamily	SSF47459	1.45E-6	288	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.92E-4	293	323	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.4E-5	296	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MDHETDTSQQ IQKERKYVVS AVATVLSDIC GPGEWMPMSK LHSKAYWKNG KSEEQAMMHS 60 VYGLEWSEPL IAFALCCGSW SSPAAWALAL LHSASAATRA RADCLEMEAI VEGPFDYSAM 120 DQLLPDFDPF VSMETITLSN GLCETVQKQW MSGTDCTPWS TTIDSQYHGG DVISINCVNV 180 NAVEQHAERY VNPSVAMDDQ LQDQWWKDEE EYAIFSTCLE VSHNQSINAL PDHLGALSSR 240 EFDGQQIESA SCPQNKCDLQ NHSQQGNAYS EGSNHHSNGD IKSCKSGSSA VNKNIILERK 300 RRGKLNHWLY TLRSLVPFIT KVSFYTTYLL PETC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF676376	3e-40	EF676376.1 Picea sitchensis clone WS02734_F06 unknown mRNA.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-06	bHLH family protein