PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029759-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 264aa    MW: 29352.8 Da    PI: 4.6321
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029759-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000131701923455
                       TTS-.STCHHHHHHHHHHHHHHH CS
               HLH  34 pskK.lsKaeiLekAveYIksLq 55 
                        s+  ++Ka+i+  +++YI+sLq
  PSME_00029759-RA 170 ESPSnMDKASIVSDVIDYIQSLQ 192
                       4455599***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-5172212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-6173209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEVPMLALMI LFDPKYLNEI GKSMGGSSLE TTSYLEMGVA GISSNSIDPL HTLLGMESFR  60
LDDFEDSVFM PSSESLGFSG LESSRWTNLR EGNLQPFSSN ENYGPTADHT YMPNKNVQNA  120
EPTNAPRNIV VKYIGRSSKR NCSSMLITFS QNEEHYADKV TNIVEKSGQE SPSNMDKASI  180
VSDVIDYIQS LQKKIKEREV SIPALRSNIA QQSRSNTSEL ISSNTTGSVD EGDYEKKPTK  240
SQAQQGFKII EVSLDRIFLD ISYN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-