PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00029804-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 402aa MW: 44970.6 Da PI: 4.9595

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00029804-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	386.9	5.2e-119	205	400	1	196
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc+rpaq sew+q+ycs+fh +alneg+ g pvlrp+gi+lkdgllfaal ak++gk vgipecegaat+kspwna+ PSME_00029804-RA 205 PPPAAFLGPKCALWDCPRPAQSSEWCQEYCSNFHGIVALNEGPQGAGPVLRPGGIELKDGLLFAALGAKIKGKVVGIPECEGAATTKSPWNAP 297 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfdl +l+ge +rewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmk+fgg krsyymdpqpss+fewhl+eye+n++da+ lyrle PSME_00029804-RA 298 ELFDLFVLKGEVVREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKDFGGVKRSYYMDPQPSSQFEWHLFEYEMNNCDACVLYRLE 390 ***************************************************************************************** PP VOZ 187 lklvdekksa 196 lk+vd+kk++ PSME_00029804-RA 391 LKQVDSKKNT 400 *****986 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MGKRSKSTSK STAHQSLKTK AKNRVDDLQG MFTDLQEARK ENRVSDAVVL EEQVHQLLRE 60 WKAELHEASP ATSLLAASLC SSDLSSDMWR LLQLHEEEDD ATSFLAETCS PELQLKETIL 120 EAVNPTSFQE DFFVDYANTQ VQTIDGTCRS ENIHAESLLQ SIDEGLGAVA QMNRDFSHNL 180 CLSFDPGVEE ETIPKFQGPC PGISPPPAAF LGPKCALWDC PRPAQSSEWC QEYCSNFHGI 240 VALNEGPQGA GPVLRPGGIE LKDGLLFAAL GAKIKGKVVG IPECEGAATT KSPWNAPELF 300 DLFVLKGEVV REWLFFDKPR RAFESGNRKQ RSLPDYSGRG WHESRKQVMK DFGGVKRSYY 360 MDPQPSSQFE WHLFEYEMNN CDACVLYRLE LKQVDSKKNT NP

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MGKRSKSTSK STAHQSLKTK AKNRVDDLQG MFTDLQEARK ENRVSDAVVL EEQVHQLLRE  60
WKAELHEASP ATSLLAASLC SSDLSSDMWR LLQLHEEEDD ATSFLAETCS PELQLKETIL  120
EAVNPTSFQE DFFVDYANTQ VQTIDGTCRS ENIHAESLLQ SIDEGLGAVA QMNRDFSHNL  180
CLSFDPGVEE ETIPKFQGPC PGISPPPAAF LGPKCALWDC PRPAQSSEWC QEYCSNFHGI  240
VALNEGPQGA GPVLRPGGIE LKDGLLFAAL GAKIKGKVVG IPECEGAATT KSPWNAPELF  300
DLFVLKGEVV REWLFFDKPR RAFESGNRKQ RSLPDYSGRG WHESRKQVMK DFGGVKRSYY  360
MDPQPSSQFE WHLFEYEMNN CDACVLYRLE LKQVDSKKNT NP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115389	0.0	BT115389.1 Picea glauca clone GQ03615_G11 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010657013.1	1e-173	PREDICTED: transcription factor VOZ1
Refseq	XP_019079230.1	1e-173	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-158	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1D1ZGU8	1e-172	A0A1D1ZGU8_9ARAE; Transcription factor MYC4
STRING	ERN14021	1e-172	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-153	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]