PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00030014-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 223aa    MW: 25136.9 Da    PI: 8.3625
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00030014-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.24.1e-29131188259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYG+K  k+s++pr+YYrC+ ++C vkk ver+a+d+ +v++tY g+Hnhe
  PSME_00030014-RA 131 QDGYKWRKYGRKFLKNSPNPRNYYRCSDSNCDVKKTVERDAHDKGIVITTYLGNHNHE 188
                       8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-31119190IPR003657WRKY domain
SuperFamilySSF1182901.19E-26122190IPR003657WRKY domain
PROSITE profilePS5081129.379125190IPR003657WRKY domain
SMARTSM007743.4E-30130189IPR003657WRKY domain
PfamPF031066.3E-23131188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MANFGPIIRH SQDAIKGFSK GQTQPLQEAN CSQNRKGAEA FEILDFLVSE EDADDQSCNF  60
KTGTSGPSIQ RDFACSFPTN PPCIHLNHNS NVIQAHESPE TINPQEGSRK RKAERGLKYA  120
FVTRSETDIL QDGYKWRKYG RKFLKNSPNP RNYYRCSDSN CDVKKTVERD AHDKGIVITT  180
YLGNHNHESP TVIYYIGRPE MHQAASASTP NYQLGNGAFF RSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22123190774WRKY transcription factor 1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2697741e-32EU269774.1 Pinus monticola WRKY transcription factor PmWRKY126 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_008457906.13e-36(Cucumis melo)
STRINGXP_004148451.12e-36(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.14e-30WRKY DNA-binding protein 51