PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00030063-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 253aa    MW: 27780.5 Da    PI: 8.4571
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00030063-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.7e-08321826
                      GGGGTS--TTTTT-SS-SS CS
           zf-CCCH  8 ffartGtCkyGdrCkFaHg 26
                      +f +tGtCkyG+ Ck++H+
  PSME_00030063-RA  3 HFIKTGTCKYGAVCKYHHP 21
                      899***************8 PP
2zf-CCCH32.31.7e-104166227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      ++++C++++ tG CkyG++CkF+H++
  PSME_00030063-RA 41 GEKECPYYMCTGSCKYGATCKFHHSE 66
                      6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.8122IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.883123IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-5321IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-43966IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9713967IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-64167IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-84166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-44566IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.60.40.4201.1E-9148189IPR008972Cupredoxin
PfamPF077316.6E-10148190IPR011706Multicopper oxidase, type 2
SuperFamilySSF495031.19E-7149189IPR008972Cupredoxin
PROSITE profilePS5137510.413195229IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.9E-8201231IPR002885Pentatricopeptide repeat
PfamPF130414.2E-14201242IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.418230253IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.8E-4233253IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005507Molecular Functioncopper ion binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MQHFIKTGTC KYGAVCKYHH PSDTDGSRVQ LNYLGLPIRQ GEKECPYYMC TGSCKYGATC  60
KFHHSEPTAL LPDSGSPVYA MAELSLSPAS GSPYPAGLAS WSLQKAPYVS GPQLQGPSTY  120
IPVIHSHQQS MPSVQPGWST YHIPSCSRHG NYDSTEDPSK FKLEYPPERN TVAVPAGGWA  180
AIRFKADNPD SRNRTLLKVD AVIDGYCKKQ NTAEAMKVFN EIMQRGCRPN ISTYNILMNG  240
LVNEGRVGEG VKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6771211e-150EF677121.1 Picea sitchensis clone WS02762_D09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252579.16e-48PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLB8LMU31e-77B8LMU3_PICSI; Uncharacterized protein
STRINGXP_010252578.12e-47(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.16e-31zinc finger nuclease 2