PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00030124-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

BES1

Protein Properties

Length: 244aa MW: 26570.9 Da PI: 9.8573

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00030124-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	135.1	7.4e-42	6	81	3	78
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskplee 78 +gr p+ kErE n +RERrRRa aaki+aGLR Gny+lpk++D neVlkALc+eAGw+v++DGttyr + ++ PSME_00030124-RA 6 GGRLPSSKEREENTKRERRRRAKAAKIFAGLRLFGNYNLPKHCDSNEVLKALCAEAGWIVHADGTTYRPDCTISSS 81 799*****************************************************************88876633 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.7E-38	6	80	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MAMTWGGRLP SSKEREENTK RERRRRAKAA KIFAGLRLFG NYNLPKHCDS NEVLKALCAE 60 AGWIVHADGT TYRPDCTISS SSPAVEATYI ESEKGSLIPW LKGLGSNRLA AQRALPHLQI 120 MPSGHGSASV TPPLTPPIVR PPSWSFQGMG HSNSESGFSI QGVDAHWTVA EYSSMITKNV 180 GISASTKGNE NVSASSFIPL MVSNGINAFE EQKIQHLQPE QLALTLGSSS THKSSRKAYH 240 RQDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-18	27	76	391	440	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-18	27	76	391	440	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-18	27	76	391	440	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-18	27	76	391	440	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009352718.1	2e-33	PREDICTED: BES1/BZR1 homolog protein 4-like
Swissprot	Q9ZV88	2e-24	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	D5ACJ3	1e-65	D5ACJ3_PICSI; Uncharacterized protein
STRING	XP_009352718.1	7e-33	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-20	BES1/BZR1 homolog 4