PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00030216-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 303aa    MW: 34099.9 Da    PI: 9.0131
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00030216-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-05149173730
                       HHHHHHHHHHHHHHHHHHCTSCC.C CS
               HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                        +Er+RR+++N++++ L  l+P+  
  PSME_00030216-RA 149 VAERKRRKKLNERLNALCALVPNiT 173
                       68********************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF007224.4E-9154IPR000757Glycoside hydrolase family 16
SuperFamilySSF498999.5E-232137IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:2.60.120.2002.6E-332133IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF069558.5E-1890132IPR010713Xyloglucan endo-transglycosylase, C-terminal
CDDcd000832.75E-7139203No hitNo description
SuperFamilySSF474591.83E-11141215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.588142198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.002148204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-13149212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006073Biological Processcellular glucan metabolic process
GO:0005618Cellular Componentcell wall
GO:0048046Cellular Componentapoplast
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762Molecular Functionxyloglucan:xyloglucosyl transferase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MRFIVAAVVV RVFKNCENIL GIPYPSSKPM QVIASLWNGE NWATNGGRSK IKWKQSPFIA  60
TFKSFGIEGH KCLLQQGDSQ SSPFCPSSPA SSEWWEDMGS IGLSAEQRRQ LRWVRKNYMA  120
YDYCTDKTRF PKLRLNISSG RRHLSKNLVA ERKRRKKLNE RLNALCALVP NITKSSIIFP  180
ASLDLHFLSD AIEYTKELQQ QVKELQDELD EMDIHPGNPT TPPNLENGGQ TALDEEAHAR  240
CSGKTDLTKG PGNATEETIQ TMQVDAHVFN LRIFSEKRVG GFVRLMQAMD ALGLDILNAN  300
ITS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1umz_A5e-313133147268XYLOGLUCAN ENDOTRANSGLYCOSYLASE
1umz_B5e-313133147268XYLOGLUCAN ENDOTRANSGLYCOSYLASE
1un1_A5e-313133147268XYLOGLUCAN ENDOTRANSGLYCOSYLASE
1un1_B5e-313133147268XYLOGLUCAN ENDOTRANSGLYCOSYLASE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150157ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.18e-15bHLH family protein