PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00030429-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HB-other
Protein Properties Length: 184aa    MW: 20554.3 Da    PI: 10.8017
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00030429-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.61.5e-0641822556
                      --HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
          Homeobox 25 psaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                      p ++ ++ LA+k            ++++qV +WFqN+R+ +k
  PSME_00030429-RA 41 PHRDVIRSLAEKFsasperdgkiLVQTKQVWTWFQNKRYSQK 82
                      666777777777777777777668999************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-82685IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-52689IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
LSGLNGTSKL EMAGSVLNRP YLLEPVQEME KVLENVKGAI PHRDVIRSLA EKFSASPERD  60
GKILVQTKQV WTWFQNKRYS QKSKSIKVQG NTAPSPRDDS LPKRTVTSSA AVPSGRKNPD  120
AAEMEFEAKS ARDGAWSVQE QGEEKKGKRK EERKKDVKGL EKKRRGGQSQ RRKDRTLGGE  180
KGGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147164KRKEERKKDVKGLEKKRR
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6773461e-133EF677346.1 Picea sitchensis clone WS02766_B05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275167.13e-38PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_010275168.13e-38PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ73e-24SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLB8LNE32e-61B8LNE3_PICSI; Uncharacterized protein
STRINGXP_010275166.11e-37(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.36e-27sequence-specific DNA binding transcription factors;sequence-specific DNA binding