PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00030461-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

BBR-BPC

Protein Properties

Length: 126aa MW: 14074.9 Da PI: 7.4179

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00030461-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	42.6	2.2e-13	1	93	29	117
GAGA_bind 29 mssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.salpvgvqvlsgtksidslqqlse...p 117 ms++aerda+i ern+a+s+kkaa+ae++ a+ qrd a a+rn a++++d ++++l +++++ + +++++ls++k ++ l + ++ + PSME_00030461-RA 1 MSIVAERDAAIVERNTAFSKKKAAFAEKETALFQRDVAYADRNTAILDHDAAAATLDYARDGGWnCQRRFSCGTLSNAKILQVLAENTNffaR 93 9******************************************************999887646778999***9999988885554442 PP

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MSIVAERDAA IVERNTAFSK KKAAFAEKET ALFQRDVAYA DRNTAILDHD AAAATLDYAR 60 DGGWNCQRRF SCGTLSNAKI LQVLAENTNF FAREFQSMQP INVAFFSPVL VTPLFEEPQK 120 TVKHIS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF677529	1e-120	EF677529.1 Picea sitchensis clone WS02770_D01 unknown mRNA.
GenBank	FJ982281	1e-120	FJ982281.1 Picea sitchensis GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LNW9	2e-62	B8LNW9_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-09	basic pentacysteine 6