PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00030471-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 312aa    MW: 34781.1 Da    PI: 6.7969
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00030471-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-15147197255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +ykG r+++ +g+++AeIrd    g + +r++l +f taeeAa a+++a++  +g
  PSME_00030471-RA 147 RYKGLRRRP-WGKFAAEIRDS---GrRGARVWLRTFKTAEEAAMAYDKAALLNRG 197
                       8********.**********4...5444**********************87766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.21E-26146206No hitNo description
Gene3DG3DSA:3.30.730.101.9E-26147205IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-19147207IPR016177DNA-binding domain
PROSITE profilePS5103221.391147205IPR001471AP2/ERF domain
PfamPF008472.3E-10147193IPR001471AP2/ERF domain
SMARTSM003804.1E-28147211IPR001471AP2/ERF domain
PRINTSPR003672.1E-8148159IPR001471AP2/ERF domain
PRINTSPR003672.1E-8171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MALETASPNN AEGSYQHEHG PVVSAERLLE DVWAHFIAAR KSDQPIHDGL QPANHTKEES  60
CCNVEDQDQD QVQYPLLLPL KENDSEDMIL FQLLNEPAAN LGWTAIHNQQ EMAIPGATGS  120
TAYTPAICNT KMTRAQGEAA EKPSIKRYKG LRRRPWGKFA AEIRDSGRRG ARVWLRTFKT  180
AEEAAMAYDK AALLNRGTRA SLNFPIEVVT NALADTTEKW SSKLISSRHK QKHIKVSHHH  240
IELRKKMDTP DAGSTIGVDF SKDDGISIMS QKIRSSDDIH RVDFVLESPP PEKRFICSAA  300
SGLVNETEII YA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-24146208163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.15e-23ethylene responsive element binding factor 1