PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00030658-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 616aa    MW: 69492.2 Da    PI: 5.1012
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00030658-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.3e-07315336325
                       S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                       t+ C+ffa+ G Ck+G++C F+H
  PSME_00030658-RA 315 TPVCKFFAK-GMCKRGNSCFFSH 336
                       899******.************9 PP
2zf-CCCH17.66.7e-06341364225
                       -S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                       k+e+C++f+    C+yG+ C F+H
  PSME_00030658-RA 341 KQEICKYFLTLEGCRYGEECWFSH 364
                       89********99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-6312338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901312339IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4315336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5315337IPR000571Zinc finger, CCCH-type
SMARTSM003560.066339366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103340367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5341365IPR000571Zinc finger, CCCH-type
PfamPF103542.7E-7406538IPR019446Domain of unknown function DUF2431
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MVGDMDASSL HDESLIKPQD DFLEVHAPVH VEDVCNERTL DPPNSKTIQD ALDLLVSLNA  60
LKPPAHHRGK YEPTLYGNLL GSLPLSLEAS MLVIKFGQSG FLREGALIGS LMDARPMPII  120
QPFGQQSLFN KYMDSYYNDA NGSVGSSHHA TSLMANLCAV LFWQRVLKLG VWIESAPTTT  180
KLSAHGHATL VRMDDKSALI AEVVMAIMHR FRPKFLCLLK GPPSYYNVYE FKHTCILSPG  240
QIEANLSFAV GTELADDIPT DVCIEAPYVN SVSFNTSGIG FELTQIIKEI RTQCTQQNLS  300
FSQGEYFQDL TTTATPVCKF FAKGMCKRGN SCFFSHTDHA KQEICKYFLT LEGCRYGEEC  360
WFSHKIQASD IPEYRQDVEF EDEIASAVSL VNLFPRIEEH NQKCILIFGE SDFRFSLNLA  420
LHYDPSKIII TTTNSKSYST KEESAASMRI DELYNLDAEI LWDIDPPQFI RHTSVPWSKV  480
QCIVWTVTSF GRDEELEMQK DLIKKFFEFL AVSLIARDLN DVHVILTVNN SKYAQLQIVF  540
NGRIEGNSEQ KLDIRLVPWL NTNWESSRQL QASLNSGKVF WLGLFLTITT VDNTDPLYLP  600
VEAFLNAKND CGWAQC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-06C3H family protein