PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00030699-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 384aa    MW: 42523 Da    PI: 8.1417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00030699-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12199245455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++Er+RR+++N++f  L  ++P +     kK +K+++L  A +Y+k+Lq
  PSME_00030699-RA 199 DHIMAERKRREKLNQRFIALSAIVPGL-----KKTDKISVLGDAFKYVKQLQ 245
                       699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-16199255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16200257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-10200245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.39E-12200249No hitNo description
SMARTSM003531.6E-13201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEATDLVGLT EPAAEQLEAL MGYHDNDNFG YEFLTSTLTG YPRNLKLTAA VSHLGVRPSG  60
GGLGYERPAK QSKANGSDDS SFQRQQRFSS NVSTPPSLYV PNSQQKLQLN FSNFSKLKAH  120
QTYENLALTT PCKKAEIVAS GGHDHSCISD VSHSHNAVSS TQFFPRNAGP SDMRISSLPA  180
ENRDSNQVPI NKASGNSKDH IMAERKRREK LNQRFIALSA IVPGLKKTDK ISVLGDAFKY  240
VKQLQDRIKT LEEQAPKKTV ESVVYVKKEL CTDDGHYSDK ASNSPCINSS TDKDVIERLL  300
TPEIEIRVIN RNVLIHAHCE KRKGLLLKFV AELETLQLTV VNANILSFSE ATFDLTFNAQ  360
MEEGCDLTVT DMGKAIQALF KRMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208ERKRRE
2204209RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-49bHLH family protein