PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00030811-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 226aa MW: 25708.1 Da PI: 7.3408

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00030811-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	61.1	3.6e-19	9	61	54	107
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107 ++ ewyfFs++dkky++g+r+nratk+gyWkatgkd+++ s k++ +g+kktL PSME_00030811-RA 9 RDLEWYFFSPHDKKYPNGTRTNRATKAGYWKATGKDRKINS-KSSMIGTKKTLD 61 4569***********************************.8999****95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	17.706	1	116	IPR003441	NAC domain
SuperFamily	SSF101941	3.27E-19	8	71	IPR003441	NAC domain
Pfam	PF02365	6.7E-7	13	61	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MDKSFFPNRD LEWYFFSPHD KKYPNGTRTN RATKAGYWKA TGKDRKINSK SSMIGTKKTL 60 DAFVLCRVCK KNGIEPRVGC CNEPPIKKSA LPSEMNNSFS DKMNKIDKGY TQVKQEEADT 120 QENPTLKLET SSETLNDRTN NGAPLNQWLQ FLLDEPNPTY ILTSPANARH DLTVSFMLGG 180 ARLEQESLWP MFKIDNFSEG LADLSFNQIT SQIEPMLSHT MDACFE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-15	1	64	57	124	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-15	1	64	57	124	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-15	1	64	57	124	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-15	1	64	57	124	NO APICAL MERISTEM PROTEIN
3swm_A	1e-15	1	64	60	127	NAC domain-containing protein 19
3swm_B	1e-15	1	64	60	127	NAC domain-containing protein 19
3swm_C	1e-15	1	64	60	127	NAC domain-containing protein 19
3swm_D	1e-15	1	64	60	127	NAC domain-containing protein 19
3swp_A	1e-15	1	64	60	127	NAC domain-containing protein 19
3swp_B	1e-15	1	64	60	127	NAC domain-containing protein 19
3swp_C	1e-15	1	64	60	127	NAC domain-containing protein 19
3swp_D	1e-15	1	64	60	127	NAC domain-containing protein 19
4dul_A	1e-15	1	64	57	124	NAC domain-containing protein 19
4dul_B	1e-15	1	64	57	124	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	4e-28	NAC domain containing protein 28