PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00030945-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 340aa    MW: 38172.7 Da    PI: 5.2841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00030945-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.48.2e-091491881855
               AP2  18 eIrdpseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +Ir    n+   k  +r +lg++ taeeAa a+++a++ ++g
  PSME_00030945-RA 149 QIRSG--NKrfsKAgARLWLGTYKTAEEAAMAYDKAALLIRG 188
                       44442..33554337**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.923132196IPR001471AP2/ERF domain
PfamPF008471.4E-5140188IPR001471AP2/ERF domain
CDDcd000181.03E-18140197No hitNo description
SMARTSM003804.1E-14141202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-17147196IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-12156198IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDLETAFPHG AEASYRHHHG GVVSSESLLE DVWAHFISTG TDNSIHYNEP QYRSACVNHG  60
EEGSSWNPDI SVLPLKENDS EDMILFDLLN EATKHGWSPS PEQQVIMAIP EMTGSTPYVP  120
AICNTDRTTR AQREGAEKSK RYRGTSVGQI RSGNKRFSKA GARLWLGTYK TAEEAAMAYD  180
KAALLIRGTR ATLNFPIERR IRMSYDHIEL RKKMEVADAE SFGLDFSKYI AEDDDRLKTM  240
RLKKLRERTR RSCDHVQEAA GSVLESLVPD QKHLHSAACG LVNDVRMNSN SNNICLAFDS  300
DVIELQDLGS DYLEELLLST EISNDFLGFS LPPLFDVLQT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-16ethylene responsive element binding factor 2