PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031048-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 175aa    MW: 20634.7 Da    PI: 5.2731
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031048-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.68.1e-12561451697
                       EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3  16 lvlpkkfaeeh............ggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       l +p++ + ++            +g   ++    ++d +g sW++    y ++++r v+t GW+eF++++++k+gD+++ +  +++ f  +v+
  PSME_00031048-RA  56 LLIPNREMVTNlyfqlmfmikylSG---SQGIAAFKDYDGFSWRIDWyAYLQYGRRLVFTIGWNEFASDHNVKDGDILLVEILNSEHF--KVQ 143
                       6677777777777777776644533...3346899***********946699*****************************7776777..887 PP

                       EE CS
                B3  96 vf 97 
                       +f
  PSME_00031048-RA 144 IF 145
                       76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.005443148IPR003340B3 DNA binding domain
PfamPF023621.1E-957145IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1365145IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-1266145IPR015300DNA-binding pseudobarrel domain
CDDcd100173.96E-973145No hitNo description
PROSITE profilePS508639.96887148IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
IYFYNGSNGK LESNMEIREQ VIWTGECWFF VDNETSMMGT KGIFKNRYKP HVGEGLLIPN  60
REMVTNLYFQ LMFMIKYLSG SQGIAAFKDY DGFSWRIDWY AYLQYGRRLV FTIGWNEFAS  120
DHNVKDGDIL LVEILNSEHF KVQIFLGEIC MDIKENKALG CTREVGFLEF FHYML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.18e-08B3 family protein