PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00031067-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 351aa MW: 38296.1 Da PI: 4.6194

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00031067-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	80.6	2.6e-25	85	176	8	99
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 ++++C ++C l f +++ +kfa+++++FGa nv+kl ++lp ++r +a++s+vyeA+ar+++P G++g i++lq q++ l++++ ++++ PSME_00031067-RA 85 KQKECLENCSLLYQFTSNDLHKFAILQQVFGACNVVKLTQDLPSDQRVEAIDSMVYEANARLENPAFGCTGKIQQLQCQVSDLQSQITATQQ 176 4679***********************************************************************************99987 PP
2	DUF260	80.3	3.1e-25	217	308	8	99
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 ++++C ++C l f +++ +kfa+++++FGa nv+kl ++lp ++r +a++s+vyeA+ar+++P G++g i++lq q++ l++++ ++++ PSME_00031067-RA 217 KQKECLENCSLLYQFTSNDLHKFAILQQVFGACNVVKLTQDLPSDQRVEAIDSMVYEANARLENPAFGCTGKIQQLQCQVSDLQSQITATQQ 308 4679**********************************************************************************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.587	77	178	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-23	85	175	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	16.596	209	310	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-23	217	307	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MRYANGILKT MATGPWLLTE CLLPYCYGTH TLSTNRTFFS CDGDGGGGGR GRGRAVAVAV 60 VFKIMSNSEE KTSMAADVAD SKIQKQKECL ENCSLLYQFT SNDLHKFAIL QQVFGACNVV 120 KLTQDLPSDQ RVEAIDSMVY EANARLENPA FGCTGKIQQL QCQVSDLQSQ ITATQQVIQK 180 IRSQQAALVA SIAGFNTAGE DEKTSMGADV ADSKIQKQKE CLENCSLLYQ FTSNDLHKFA 240 ILQQVFGACN VVKLTQDLPS DQRVEAIDSM VYEANARLEN PAFGCTGKIQ QLQCQVSDLQ 300 SQITATQQII QKIRSQQAAL VASIAGFNTA GEDCDKFNPT SLKDDDDEGD D

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MRYANGILKT MATGPWLLTE CLLPYCYGTH TLSTNRTFFS CDGDGGGGGR GRGRAVAVAV  60
VFKIMSNSEE KTSMAADVAD SKIQKQKECL ENCSLLYQFT SNDLHKFAIL QQVFGACNVV  120
KLTQDLPSDQ RVEAIDSMVY EANARLENPA FGCTGKIQQL QCQVSDLQSQ ITATQQVIQK  180
IRSQQAALVA SIAGFNTAGE DEKTSMGADV ADSKIQKQKE CLENCSLLYQ FTSNDLHKFA  240
ILQQVFGACN VVKLTQDLPS DQRVEAIDSM VYEANARLEN PAFGCTGKIQ QLQCQVSDLQ  300
SQITATQQII QKIRSQQAAL VASIAGFNTA GEDCDKFNPT SLKDDDDEGD D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-20	86	307	9	108	LOB family transfactor Ramosa2.1
5ly0_B	9e-20	86	307	9	108	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022846478.1	2e-27	LOB domain-containing protein 1-like
TrEMBL	A9P1U3	2e-52	A9P1U3_PICSI; Uncharacterized protein
STRING	Solyc11g072470.1.1	1e-25	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-26	LOB domain-containing protein 1